Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  141 bits (356), Expect = 4e-38
 Identities = 98/280 (35%), Positives = 147/280 (52%), Gaps = 30/280 (10%)

Query: 50  QAQLLQSEKMASVGQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFAQLADFVEQSAPSFE 109
           +  ++QSEKM SVG LAAG+AHEINNP+G  L N+  +R    +  +L   +EQ+    +
Sbjct: 401 EEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIR--RRLSPELPKNIEQAEA--D 456

Query: 110 GSEFYQAWMRFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQSVSHSSDGRFAECN 169
           G +  Q        H L     +V  L++       R   IV+ + + S  S  + + C+
Sbjct: 457 GIDLAQV------NHYLE--SREVPKLLDGIQQAGARAAKIVSHMLNFSRLSSRQLSPCD 508

Query: 170 LNDCIESALRIVWNQFKYTMLVD-------RQLAENLPKIKGIAPEIQQVLMNMFINASH 222
           L   I+ A+ I  N F  T+  D       RQ    L  +  IA E++QVL+N+  NA+ 
Sbjct: 509 LPALIDQAVEIASNDFDLTIGFDFKGQHIIRQFDPELGPVPCIANELEQVLLNLLKNAAQ 568

Query: 223 AC------DEHGELTITTDTLNEKGKAWVQVQIADNGHGISPEHLAKIFDPFFTTKPVGV 276
           A       +E G +T+ T         W ++Q+ DNG G+S     + F+PFFTTK +G 
Sbjct: 569 AIHQRPESEEPGRITLRT----RLNPPWAEIQVEDNGIGMSESIRKRTFEPFFTTKEIGQ 624

Query: 277 GTGLGLSIAFGIV-EKHQGKISVTSEVGQGTRFTLLFPAI 315
           GTGLGLS+++ IV   H+G++ V S +G GT FTL  P +
Sbjct: 625 GTGLGLSVSYFIVTNNHKGQMEVHSSLGTGTCFTLRLPLV 664