Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (357), Expect = 3e-38
 Identities = 103/318 (32%), Positives = 174/318 (54%), Gaps = 53/318 (16%)

Query: 6   QYQRIYE--RERKARILA-----EKLLEEKSRALYDKVLELQSTLEQLNGAQAQLLQSEK 58
           Q+ R+ +  + R A+I A     E  +EE++R+L DK LELQ  +  LN  + QL+ +EK
Sbjct: 405 QFDRMLDLLQRRNAQIQAAAEQLEMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEK 464

Query: 59  MASVGQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFAQLADFVEQSAPSFEGSEFYQAWM 118
           + ++G+L AG+AHEINNP    L N+  LR       +L D  E                
Sbjct: 465 LTALGELTAGIAHEINNPTAVILGNMELLR------YELGDKAE---------------- 502

Query: 119 RFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQSVSHSSDGRF---AECN-LNDCI 174
                     V+E++  ++++    + R+  I+ SL  + +S  G F    E + +   I
Sbjct: 503 ---------VVKEEIDLVIQQ----VGRISTIIRSL--LQYSRPGEFNAPLEMHPITPII 547

Query: 175 ESALRIVWNQF-KYTMLVDRQLAENLPKIKGIAPEIQQVLMNMFINASHACDEHGELTIT 233
           E  L +V +   K  +++  +L  + P ++   P++ QVL+N+ +NA+HA D  G + + 
Sbjct: 548 EEMLVLVRHSIQKQEVVLITELNASCP-VQVNRPQLLQVLINLVVNAAHAMDGKGRIWVR 606

Query: 234 T-DTLNEKGKAWVQVQIADNGHGISPEHLAKIFDPFFTTKPVGVGTGLGLSIAFGIVEKH 292
           T D + +     V++++ D G GI PE L +IFDPF+TT+    GTGLGLS+++GI+++ 
Sbjct: 607 TYDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTRK--DGTGLGLSLSYGIIKRI 664

Query: 293 QGKISVTSEVGQGTRFTL 310
            G I V+S +G+G+ FT+
Sbjct: 665 GGTIEVSSVLGKGSIFTI 682