Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  161 bits (408), Expect = 2e-44
 Identities = 93/277 (33%), Positives = 149/277 (53%), Gaps = 14/277 (5%)

Query: 38  ELQSTLEQLNGAQAQLLQSEKMASVGQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFAQL 97
           E  +   Q    +  + +  K+A++GQLAAGVAHE+NNP+GF  SNLNT   Y +     
Sbjct: 189 ERDTLFAQQKRIEQSMARQGKLAAIGQLAAGVAHELNNPLGFIYSNLNTFELYLKDINTF 248

Query: 98  ADFVEQSAPSFEGSEFYQAWMRFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQSV 157
              V  S P+          ++   +H+L F+ +D   L+ ES +G  R +DI+ +L++ 
Sbjct: 249 LMEVCNSHPNA---------IKLYNKHNLDFILKDSSELINESLAGARRARDIIKNLRNF 299

Query: 158 SHSSDGRFAECNLNDCIESALRIVWNQFKYTMLVDRQLAENLPKIKGIAPEIQQVLMNMF 217
           SH  +   +  N+ + I   +RI   Q K    +      +    +G A ++ QV++N+ 
Sbjct: 300 SHPDENTISTINILELITDTVRIANTQVKKHARIKINHDLHHAFTQGNATQLSQVILNLI 359

Query: 218 INASHACD-EHGELTITTDTLNEKGKAWVQVQIADNGHGISPEHLAKIFDPFFTTKPVGV 276
            NA H+   +HG + I+ +  N     W+ ++I DNG GI    +  IF+PFFTTK +G 
Sbjct: 360 NNAHHSIKHQHGLIEISINKFNN----WINIEIEDNGCGIDDTDIPHIFEPFFTTKEIGQ 415

Query: 277 GTGLGLSIAFGIVEKHQGKISVTSEVGQGTRFTLLFP 313
           GTGLGLSI+  I+E+H G I++     +GT+F +  P
Sbjct: 416 GTGLGLSISRAIIEQHNGCIALVHTGLKGTKFVISLP 452