Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  177 bits (448), Expect = 4e-49
 Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 23/314 (7%)

Query: 3   AEAQYQRIYERERKARILAEKLLEEKSRALYDKVLELQSTLEQLNGAQAQLLQSEKMASV 62
           +E  Y   Y RE+KAR   E+LLE+ +R LY+K + LQ  ++ +   Q  ++Q EK+AS+
Sbjct: 4   SENPYYVAYLREKKARQEVEQLLEDSTRQLYEKNVLLQQQIDLIKQQQQSMIQQEKLASL 63

Query: 63  GQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFAQLADFVEQSAPSFEGSEFYQAWMRFKQ 122
           G +AAGVAHEINNP+ + LSN+ +L  YA+      D         EG          KQ
Sbjct: 64  GTVAAGVAHEINNPLAYILSNVRSLISYAQDLLASMD---------EGD---------KQ 105

Query: 123 QHD---LAFVREDVLSLVEESASGLHRVKDIVTSLQSVSHSSDGRFAECNLNDCIESALR 179
           Q D   L F++ED+  L  ++  GL R+KDIV  L   + +     +   L D +E +L+
Sbjct: 106 QIDQAKLQFIKEDLPELASDTCQGLMRIKDIVNHLLFFARTDSTGKSVIQLVDALEFSLK 165

Query: 180 IVWNQFKYTMLVDRQLAENLPKIKGIAPEIQQVLMNMFINASHACDEHGELTITTDTLNE 239
           ++       +L+ ++++ ++P I     E+ QVLMN+ +NA  ACD   +          
Sbjct: 166 LL-RPMLNNVLIKKEIS-HVPMILFNVGELNQVLMNIIVNAYQACDVVSDRPSEIRLKLT 223

Query: 240 KGKAWVQVQIADNGHGISPEHLAKIFDPFFTTKPVGVGTGLGLSIAFGIVEKHQGKISVT 299
           +    + + + DNG G+    L ++FD F+TTKPVG GTG+G+SI   I+ +H   I V 
Sbjct: 224 QSDTNICLTVVDNGCGMDEYTLGRMFDAFYTTKPVGTGTGVGMSIVLQILRQHDCTIEVK 283

Query: 300 SEVGQGTRFTLLFP 313
           SE   GT   +LFP
Sbjct: 284 SEPDNGTEVMILFP 297