Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD/PcrA from Pseudomonas fluorescens FW300-N2E2

 Score = 98.6 bits (244), Expect = 9e-25
 Identities = 92/342 (26%), Positives = 152/342 (44%), Gaps = 51/342 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN +Q+ AV  +    LVLAGAGSGKT VL  R+++L+Q   A P  IL V F   AA E
Sbjct: 12  LNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAE 71

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIIN---RVEGKTVIMSPLANDSKLKQAWCIDWL 316
           M  R++  +G+    + + TFH L  R++    +  G +     L +D    Q   +  +
Sbjct: 72  MRHRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD---QQRLVKRV 128

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
            R      + +RW    A+W                      ++  Q D+    GL  + 
Sbjct: 129 IRE--LGLDEQRWPARQAQW----------------------FINGQKDE----GLRPQH 160

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK-----GK 431
           +Q      D +      L+     Y+A++   +    IDF+ ++ RA +           
Sbjct: 161 IQ---ASGDLF------LATMRSIYEAYEAACQRAGVIDFSELLLRALDLWRDHPGLLAH 211

Query: 432 FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           ++  ++ ++VDE+QD +  +   L+ L    +G  +L  VGDD QSIY + G+ ++    
Sbjct: 212 YQKRFRHVLVDEFQDTNAVQYAWLRLLA---KGGDSLMVVGDDDQSIYGWRGAKIENIHQ 268

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           +++ F  + V  L+  YR    I   AN  I  N  +L K L
Sbjct: 269 YSADFPDAEVIRLEQNYRSTAGILKAANALIANNTGRLGKEL 310



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E  YV ++ ++EG FP ++            E+     EERRL YV +
Sbjct: 556 IQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSL----------EEPGRLEEERRLAYVGI 605

Query: 655 TRAKEKVWVTY 665
           TRA + + +TY
Sbjct: 606 TRAMQNLVLTY 616