Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas fluorescens FW300-N2C3

 Score = 96.3 bits (238), Expect = 4e-24
 Identities = 93/344 (27%), Positives = 149/344 (43%), Gaps = 51/344 (14%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  QQ AV       LVLAGAGSGKTSV+T ++++L+Q+   + + I+ + F   AA
Sbjct: 2   SRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAA 61

Query: 258 QEMAERLKNKIGL-EAERLHINTFHQLGLRIINRVEGKTVIMSPLA-NDSKLKQAWCIDW 315
           +EM ER+   +   E   L + TFH LGL II +   +       +  D    +A   D 
Sbjct: 62  REMKERVGGLLRAGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKALMTDI 121

Query: 316 LKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKK 375
           +++ +         +  +  W    +   + L  +  NPK         +Q A +     
Sbjct: 122 MQKEYSGDDGVDEIKNMIGSWKNDLILPAEAL-ENARNPK---------EQTAAI----- 166

Query: 376 ELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK-----G 430
                                    Y  +Q+ LK  N +DF+ +I    +  +       
Sbjct: 167 ------------------------VYTHYQRTLKAFNAVDFDDLILLPVKLFQDHADILE 202

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLF-AVGDDWQSIYQFAGSDVDLT 489
           K+++  ++++VDEYQD +  +  L++ L     G+ N F  VGDD QSIY + G+  +  
Sbjct: 203 KWQNKVRYLLVDEYQDTNASQYLLVKLLI----GKRNQFTVVGDDDQSIYAWRGARPENL 258

Query: 490 TGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
                 +    V  L+  YR   +I   AN  I  NPH+  K L
Sbjct: 259 MLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFEKQL 302



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HASKG E  YV I+ ++E   P R            S +     EERRL YV +
Sbjct: 553 VQMMTLHASKGLEFPYVFIMGMEEEILPHR-----------SSIEADTIEEERRLAYVGI 601

Query: 655 TRAKEKVWVTY 665
           TRA++ +  T+
Sbjct: 602 TRARQTLAFTF 612