Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 93.2 bits (230), Expect = 4e-23
 Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 45/339 (13%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN +Q+ AV       LVLAGAGSGKT VL  R+++L Q   A    IL V F   AA E
Sbjct: 12  LNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVTFTNKAAAE 71

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M +R++  + +  + + + TFH L  R++     +  +           Q   +  + R 
Sbjct: 72  MRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQRLVKRVIRE 131

Query: 320 WMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQE 379
                + +RW    A+W                      W+  Q D+    GL  + +Q 
Sbjct: 132 --LGLDEQRWPARQAQW----------------------WINAQKDE----GLRPRNIQ- 162

Query: 380 RLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK-----GKFRS 434
                   P  +  L+     Y+A+++       IDF+ ++ RA +           ++ 
Sbjct: 163 --------PGGDLFLATQLKIYEAYEEACARAGVIDFSELLLRALDLWRDHPGLLEHYQR 214

Query: 435 PWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFAS 494
            ++ ++VDE+QD +  +   L+ L    +G  +L  VGDD QSIY + G+ ++    F+ 
Sbjct: 215 RFRHVLVDEFQDTNAVQYAWLRLLA---KGGESLMVVGDDDQSIYGWRGARIENLHQFSQ 271

Query: 495 RFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
            F  +    L+  YR    I   AN  I  N  +L K L
Sbjct: 272 DFPDAETIRLEQNYRSTACILKAANALIANNQGRLGKEL 310



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V ++ ++EG FP ++            E+     EERRL YV +
Sbjct: 558 VQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSL----------EESGRLEEERRLAYVGI 607

Query: 655 TRAKEKVWVTY 665
           TRA +++ +TY
Sbjct: 608 TRAMQQLVITY 618