Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas stutzeri RCH2

 Score =  107 bits (267), Expect = 2e-27
 Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 55/346 (15%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  QQ AV       LVLAGAGSGKTSV+T +++YL+Q    +   I+ + F   AA
Sbjct: 2   SRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIQARHIVAMTFTNKAA 61

Query: 258 QEMAERLKNKI-GLEAERLHINTFHQLGLRIINRVEGKTVIMSP---LANDSKLKQAWCI 313
           +EM ER+ + + G EA  L ++TFH LG+ II R E   +   P   + +D  +K A   
Sbjct: 62  REMKERVGSLLKGAEARGLTVSTFHNLGMNII-RKEYARMGYKPGFSIFDDGDIK-ALLT 119

Query: 314 DWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLS 373
           D +++ +         + ++  W    +  D+ L ++  NPK         +Q A +   
Sbjct: 120 DIMQKEYSGDDGADEIKNYIDSWKNDLILPDEAL-ANARNPK---------EQTAAI--- 166

Query: 374 KKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK---- 429
                                      Y  +Q+ LK  N +DFN +I    +  ++    
Sbjct: 167 --------------------------VYLHYQRTLKAYNAVDFNDLILLPVKLFQEHADI 200

Query: 430 -GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLF-AVGDDWQSIYQFAGSDVD 487
             K+++  ++++VDEYQD +  +  L++ L     G  N F  VGDD QSIY + G+  +
Sbjct: 201 LEKWQNRIRYLLVDEYQDTNASQYLLVKLLV----GMRNQFTVVGDDDQSIYAWRGARPE 256

Query: 488 LTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
                   +    V  L+  YR   +I   AN  I  NPH   K L
Sbjct: 257 NLMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFEKQL 302



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HASKG E   V I+  +E   P R            S +     EERRL YV +
Sbjct: 553 VQMMTMHASKGLEFPSVYIIGFEEEILPHR-----------SSIESDTIEEERRLAYVGI 601

Query: 655 TRAKEKVWVTY 665
           TRAK  + +T+
Sbjct: 602 TRAKRNLALTF 612