Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 86.3 bits (212), Expect = 4e-21
 Identities = 128/541 (23%), Positives = 216/541 (39%), Gaps = 84/541 (15%)

Query: 204 QQYAVLLNDDH-NLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 262
           +Q+A++L+      + AGAGSGK++ L  RV ++L     +P ++ +++F   +  ++ E
Sbjct: 120 EQWAMILSRSPVTRIFAGAGSGKSTTLLLRVVFMLCHMGIEPGRLTVISFTNASCAQLRE 179

Query: 263 RLKNKIGL-------EAERLHINTFH----QLGLRIINR------VEGKTVIM----SPL 301
           +L   +G        +  R  + TFH    QL   ++ R      ++ K        +PL
Sbjct: 180 QLVRVLGFWQVPFDAQQARQCVRTFHSAMAQLAREVLERPVWFEQLDDKAAAADEPDNPL 239

Query: 302 ANDSK-------LKQAWCIDWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENP 354
           A           LKQA+     ++ +     F+     L   P      +    + ++ P
Sbjct: 240 ATARLRPAQVRLLKQAY-----QQCYAEQATFRELVHRLLDLPAPQTESEQGKRAALKAP 294

Query: 355 -------------KLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSLCWPCY 401
                         L      Q   +  +G+   +LQ   +      R   E  + +  Y
Sbjct: 295 GDTFTLAGEFTPLPLYEAFYAQAGFIESIGIRIDQLQPGKLQCAPRERDFVEALVSFHGY 354

Query: 402 QAWQQMLKDQNQIDFNIMITRATEYVEKGKFRS-----PWKFIMVDEYQDISPQRLRLLQ 456
             ++  L++Q  + FN    + TE +  G         P++ +++DE+QDISPQ ++ LQ
Sbjct: 355 --FRAALREQGLMTFNEAFQQLTERLASGSDMPQACLVPFENLLIDEFQDISPQIVQWLQ 412

Query: 457 ALCEQ---NQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFASRFAH-----STVHHLDTTY 508
           AL  Q    +   +L A+GDDWQSIY + GS  +L   F   F       S    L+T Y
Sbjct: 413 ALHRQLARQKSSPSLMAIGDDWQSIYGWRGSSPELFMDFDKYFPRRGAKGSETLLLETNY 472

Query: 509 RFNDQIGAVANRFIQQNPHQLPKTLNSFKTQK--QKAVMLAP----NHSVEKILDEI--- 559
           R  + +       +     +  KT    K  +     V L      N  + K+++ I   
Sbjct: 473 RSIEPVIRDGEAVLAGVQFKQAKTSRPCKPTQPGDHGVKLVTGFELNKGLPKLIEAITAQ 532

Query: 560 -----NRSTNKLKTVLLLGRNHYHKPELLKDWQNRY-LSLKLDFMTCHASKGKEADYVII 613
                 R + +   VLLL R +    E L+  Q +    L +   T H +KG +A+  II
Sbjct: 533 CAHVAERQSRERTAVLLLSRRN----EPLRTIQAQLDRKLPVKAYTIHRAKGLQAEVAII 588

Query: 614 L--AVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRAKEKV-WVTYNGNGS 670
           +         P R            S D     E  RL YVA+TR   +V W T    G+
Sbjct: 589 VDDCAPVQPHPLRNALYAYSGFFRNSYDQAMADESLRLGYVAITRGVSRVFWYTRKAQGA 648

Query: 671 S 671
           +
Sbjct: 649 T 649