Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD from Pseudomonas syringae pv. syringae B728a

 Score =  102 bits (253), Expect = 8e-26
 Identities = 94/344 (27%), Positives = 151/344 (43%), Gaps = 55/344 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN +Q+ AV  +    LVLAGAGSGKT VL  R+++L+Q   A P  +L V F   AA E
Sbjct: 12  LNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAE 71

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIIN---RVEGKTVIMSPLANDSKLKQAWCIDWL 316
           M  R++  +G+    + + TFH L  R++    +  G       L +D + +       L
Sbjct: 72  MRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQR-------L 124

Query: 317 KRHWMTPTNF--KRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSK 374
            +  M       +RW    A+W                      ++  Q D+    GL  
Sbjct: 125 VKRVMRELGLDEQRWPARQAQW----------------------FINGQKDE----GLRP 158

Query: 375 KELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK----- 429
           K +Q      D +      L+     Y+A++   +    IDF+ ++ RA +         
Sbjct: 159 KHIQ---ASGDLF------LTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRDNPGLL 209

Query: 430 GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLT 489
             ++  ++ ++VDE+QD +  +   L+ L    QG  +L  VGDD QSIY + G+ ++  
Sbjct: 210 AHYQRRFRHVLVDEFQDTNAVQYAWLRLLA---QGGDSLMVVGDDDQSIYGWRGAKIENI 266

Query: 490 TGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
             ++S F  + V  L+  YR    I   AN  I  N  +L K L
Sbjct: 267 HQYSSDFPDTEVIRLEQNYRSTASILKAANGLIINNSGRLGKEL 310



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E  +V ++ ++EG FP ++            E+     EERRL YV +
Sbjct: 556 IQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSL----------EEPGRLEEERRLAYVGI 605

Query: 655 TRAKEKVWVTY 665
           TRA +++ +TY
Sbjct: 606 TRAMKQLVMTY 616