Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas syringae pv. syringae B728a

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 94/345 (27%), Positives = 152/345 (44%), Gaps = 53/345 (15%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  QQ AV       LVLAGAGSGKTSV+T ++++L+Q+   + + I+ + F   AA
Sbjct: 2   SRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAA 61

Query: 258 QEMAERLKNKI-GLEAERLHINTFHQLGLRIINRVEGKTVIMSP---LANDSKLKQAWCI 313
           +EM ER+   + G E   L ++TFH LGL II R E   +   P   + +++ +K A   
Sbjct: 62  REMKERVGTLLRGGEGRGLTVSTFHNLGLNII-RKEHTRLGYKPGFSIFDETDVK-ALMT 119

Query: 314 DWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLS 373
           D +++ +         +  +  W    +   + L  +  NPK         +Q A +   
Sbjct: 120 DIMQKEYSGDDGVDEIKNMIGSWKNDLILPAEAL-ENARNPK---------EQTAAI--- 166

Query: 374 KKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK---- 429
                                      Y  +Q+ LK  N +DF+ +I    +  ++    
Sbjct: 167 --------------------------VYTHYQRTLKAYNAVDFDDLILLPVKLFQEHADI 200

Query: 430 -GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDL 488
             K+++  ++++VDEYQD +  +  L++ L            VGDD QSIY + G+  + 
Sbjct: 201 LEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRH---QFTVVGDDDQSIYAWRGARPEN 257

Query: 489 TTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
                  +    V  L+  YR   +I   AN  I  NPH   K L
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFEKQL 302



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HASKG E  YV I+ ++E   P R            S +     EERRL YV +
Sbjct: 553 VQMMTLHASKGLEFPYVFIMGMEEEILPHR-----------SSIEADTIEEERRLAYVGI 601

Query: 655 TRAKEKVWVTY 665
           TRA++ +  T+
Sbjct: 602 TRARQTLAFTF 612