Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 794 a.a., ATP-dependent DNA helicase, Rep family from Synechococcus elongatus PCC 7942

 Score = 93.2 bits (230), Expect = 4e-23
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 36/364 (9%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN SQ+ AV       LV+AGAGSGKT  LT R+++LL+ H   PE IL V F   AA
Sbjct: 7   SQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTNKAA 66

Query: 258 QEMAERLKNKIGLEAERLHINTFHQ--LGLRIINRVEGKTVIMSPLANDSKLK--QAWCI 313
           +EM ERL+    L A++L    + Q    LR I + + ++ +   +  D  +    A C 
Sbjct: 67  KEMKERLER---LFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKDLWIGTFHAICA 123

Query: 314 DWLK---RHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQM 370
             L+     +  P N +RW K  + +    + G   L   +   +L    +K   +  + 
Sbjct: 124 RILRFDIDKYCDP-NGRRWTKQFSIFDENDVQG---LIKEIVGNQLNLDTKKFEPKSVRY 179

Query: 371 GLSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFN------IMITRAT 424
            +S  +      D  +  + N    +    Y+ +   L   N +DF+      + + R  
Sbjct: 180 TISSAKNNGWSPDEFERQQPNYRGRVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQN 239

Query: 425 EYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQ--------GQCNLFAVGDDWQ 476
           E V    +   ++ ++VDEYQD +  +  L++ L                ++F VGD  Q
Sbjct: 240 EQV-LAYWHQRFRHVLVDEYQDTNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQ 298

Query: 477 SIYQFAGSDVDLTTGFASRFAH-------STVHHLDTTYRFNDQIGAVANRFIQQNPHQL 529
           SIY F  +D  +  GF   F          T+  L+  YR  + I   AN  I+ N  ++
Sbjct: 299 SIYSFRAADFTILMGFQDDFGDRLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERI 358

Query: 530 PKTL 533
            K L
Sbjct: 359 DKVL 362



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 10/84 (11%)

Query: 582 LLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDF 641
           L  D  N+  + ++  MT HASKG E   V ++ +++G FP          +    +D  
Sbjct: 593 LASDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQGLFP----------SFRSLDDPR 642

Query: 642 PYAEERRLFYVALTRAKEKVWVTY 665
              EERRL YV +TRA+E++++T+
Sbjct: 643 AVEEERRLCYVGITRAQERLFLTH 666