Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  104 bits (259), Expect = 2e-26
 Identities = 117/459 (25%), Positives = 192/459 (41%), Gaps = 99/459 (21%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  Q+ AV   +   LVLAGAG+GKT VLT R++++L +  A P QIL V F   AA
Sbjct: 45  SGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAA 104

Query: 258 QEMAERLKNKIGLEAERL-HINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWL 316
           +EM ER+   +G   E +  + TFH +G++++ R       +  L +D  +     +  L
Sbjct: 105 REMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRR----HAELVGLRSDFTILDTDDVVRL 160

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
            +  +             +WP    AG            +  W  K LD           
Sbjct: 161 IKQLIQAEGLDD-----KRWPAKQFAG-----------MIDTWKNKGLD----------- 193

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFN------IMITRATEYVEKG 430
              ++ + D     N +       Y A+Q  L   N  DF       I + RA   V K 
Sbjct: 194 -PSQIPEGDARAFANGKGR---ELYAAYQNRLLTLNACDFGDLLLHPIRMFRANPDVLK- 248

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQ---------------------GQC--- 466
           ++ + +++I+VDEYQD +  +   L+ L +Q Q                     GQ    
Sbjct: 249 EYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQASRNRPSSGLPATFSPSDGEKGQAARS 308

Query: 467 --------------------NLFAVGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDT 506
                               N+  VGDD QSIY + G++VD    F   F  + V  L+ 
Sbjct: 309 QSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLER 368

Query: 507 TYRFNDQIGAVANRFIQQNPHQLPKTLNSFKT--QKQKAVMLAPNHSVEKI------LDE 558
            YR  + I   A   I  N  +L KTL + +T    +K  + A   S E+       +++
Sbjct: 369 NYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEARAIGEEIEQ 428

Query: 559 INRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLKLDF 597
           + R  + L  + +L R  +     ++++++R+++L L++
Sbjct: 429 LQRKKHNLNDISILVRASFQ----MREFEDRFVTLGLNY 463



 Score = 39.7 bits (91), Expect = 6e-07
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E D V +   +EG FP +     LD+      +     EERRL YV +
Sbjct: 633 VSIMTLHSAKGLEFDTVFLPGWEEGLFPHQ---RALDEGGRAGLE-----EERRLAYVGI 684

Query: 655 TRAKEK--VWVTYN 666
           TRAK +  +W   N
Sbjct: 685 TRAKRRCHIWFVSN 698