Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 721 a.a., DNA-dependent helicase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  105 bits (261), Expect = 1e-26
 Identities = 95/343 (27%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV       LVLAGAGSGKT VLT R+++LLQ     P  IL V F   AA E
Sbjct: 10  LNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M ER++  +G    R+ I TFH L  R+                            L+ H
Sbjct: 70  MRERVEKIVGHNTGRMWIGTFHGLAHRL----------------------------LRTH 101

Query: 320 WM---TPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIA-WLEKQLDQLAQMGLSKK 375
           W     P +F+       +  +  +     L      P+L+A ++  + DQ         
Sbjct: 102 WQDAGLPQSFQIMDSDDQQRLLKRILKSMNLDEKQYPPRLVAGYINGKKDQ--------- 152

Query: 376 ELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATE-YVEK----G 430
            L+   +D   +P     L L    Y+ +Q        +DF  ++ RA E ++ K     
Sbjct: 153 GLRPAHIDAGPFPMEQKLLEL----YRIYQDSCDRAGLVDFAEILLRAHELWLNKPHLLA 208

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
            ++  ++ I+VDE+QD +  +   ++ L        N+  VGDD QSIY + G+ ++   
Sbjct: 209 HYQDRFRHILVDEFQDTNAIQYAWIRVLAGNT---ANVMIVGDDDQSIYGWRGAQIENLH 265

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
            F   F  +    L+  YR    I   +N  I  NP ++ K L
Sbjct: 266 RFLQDFPGAKTIRLEQNYRSTGNILKASNELIANNPDRMGKEL 308



 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V +  V+EG FP+++ AL   D L          EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFPMVFMAGVEEGIFPSKL-ALEEGDRLE---------EERRLCYVGM 603

Query: 655 TRAKEKVWVTY 665
           TRA +K+++TY
Sbjct: 604 TRAMQKLYITY 614



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 113 QELSRLKRLPSFLSHSSVEAWVAQVYADLKLMD-MTLHEAQ-KHLPTVF 159
           +EL  +  L +FLSH+++EA   Q  A    +  MTLH A+    P VF
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAHTDAVQLMTLHSAKGLEFPMVF 571