Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  108 bits (271), Expect = 7e-28
 Identities = 105/346 (30%), Positives = 157/346 (45%), Gaps = 52/346 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV   D   LVL+GAG+GKT VLTAR++ +L +   +P Q+L V F   AA+E
Sbjct: 28  LNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAARE 87

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPL----ANDS--KLKQAWCI 313
           M ER    IG  AE++ + TFH LG+R++ R      + S      A+D    LKQ    
Sbjct: 88  MRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQILEA 147

Query: 314 DWLKRHWMTPTN----FKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQ 369
           + +     TP       +RW K     P A  AGD   G      + +   ++   +LA 
Sbjct: 148 EGIDTKKWTPQAGMGLIQRW-KDKGLLPEAVPAGDG--GREYAGGRAVDLYKQYQQRLA- 203

Query: 370 MGLSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK 429
                      +V+  D+  L   L  C   +     +L D +++               
Sbjct: 204 -----------VVNAADFGDL---LLHCLTIFTKHPDVLADYSKM--------------- 234

Query: 430 GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLT 489
                 + +I+VDEYQD +  +   L+ L    +G  N+  VGDD QSIY + G++V   
Sbjct: 235 ------FHYILVDEYQDTNVAQYLWLRLLA---RGHGNICCVGDDDQSIYSWRGAEVGNI 285

Query: 490 TGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNS 535
             F + F  +TV  L+  YR    I A A+  I+ N  +L K L +
Sbjct: 286 LRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGRLGKDLRA 331



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 582 LLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDF 641
           L+ D + R     +  MT HA+KG E D V +   +E  FP R        AL+++  + 
Sbjct: 554 LVMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHR-------RALDENGAE- 605

Query: 642 PYAEERRLFYVALTRAKEKVWVTYNGN 668
              EERRL YV LTRA+++  +++  N
Sbjct: 606 ALEEERRLAYVGLTRARKRAIISFVAN 632