Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score =  107 bits (266), Expect = 3e-27
 Identities = 100/342 (29%), Positives = 152/342 (44%), Gaps = 49/342 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN +Q+ AV   +   L+LAGAG+GKT  LTAR+ +LL +  AKP +IL V F   AA+E
Sbjct: 31  LNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAARE 90

Query: 260 MAERLKNKIGLEAERL-HINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           M ER+   +G   E +  + TFH + ++++ R      ++   +N + L     I  LK+
Sbjct: 91  MKERVAGMLGQAVEGMPWLGTFHSICVKLLRR---HAELVGLKSNFTILDADDQIRLLKQ 147

Query: 319 HWMTPTNFKRWQKHLAKWPIAYLAG--DDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
                   K       +WP   LAG  DD             W  + L            
Sbjct: 148 ------LIKAEGIDDKRWPARMLAGVIDD-------------WKNRALTPSKVPVSDASA 188

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG-----K 431
              R VD                 Y  +Q  LKD N +DF  ++       +       +
Sbjct: 189 YNHRGVDF----------------YAQYQARLKDLNAVDFGDLLLHMVTIFQDNPDVLEQ 232

Query: 432 FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           ++  ++FIMVDEYQD +  +   L+ L   ++   N+  VGDD QSIY + G++V     
Sbjct: 233 YQRWFRFIMVDEYQDTNVAQYLWLRLLAGAHK---NICCVGDDDQSIYGWRGAEVGNILR 289

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           F   F  + V  L+  YR  + I + A+  I+ N  +L K L
Sbjct: 290 FEKDFPGANVVRLEQNYRSTEHILSAASGVIRGNSGRLGKEL 331



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 8/93 (8%)

Query: 582 LLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDF 641
           L+ D   +  + K+  MT HA+KG E   V +   ++G FP++     +D++  +  +  
Sbjct: 561 LIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS---MDESGLKGLE-- 615

Query: 642 PYAEERRLFYVALTRAKEKVWVTYNGNGSSFVQ 674
              EERRL YV +TRA+E   +++ GN   F Q
Sbjct: 616 ---EERRLAYVGITRAEEICTISFAGNRRVFGQ 645