Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., putative UvrD/REP helicase from Phaeobacter inhibens DSM 17395

 Score = 90.9 bits (224), Expect = 3e-22
 Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 34/371 (9%)

Query: 199 PLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQ 258
           PLN  Q++A   + +  L+ AG G+GKT  L  R+S +L+     PE ILL+ F+  AA 
Sbjct: 197 PLNEEQRHAAEHDGNALLLKAGPGTGKTQTLVGRLS-VLKDRSVDPESILLLTFSNKAAG 255

Query: 259 EMAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           EM +R        A    I TFH  GL ++ R   +    + L +D +L     ID  + 
Sbjct: 256 EMTDRAMLAWPEAAGSAWIGTFHSFGLDLLRRFHDR----AGLPSDPRL-----IDATEA 306

Query: 319 HWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPK-LIAWLEKQLDQLAQMGLSKKEL 377
             +    F R +          L   ++L    +N + +++ + +  D++       +EL
Sbjct: 307 IALLEDEFPRLR----------LTHFNDLWDPTDNLRSILSAISRAKDEVIDQH-RYREL 355

Query: 378 QERLVDHDDYPRLNSELSLCW---PCYQAWQQMLKDQNQIDFNIMITRATEYVE-----K 429
            +++ D  +          C      Y  ++Q+  ++  +DF  ++ R T  +E     +
Sbjct: 356 AQQMADAAETGEDKIAAEKCLEIASVYDLYEQLKAERGAVDFGDLVARPTALIESDRAVR 415

Query: 430 GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAG-SDVDL 488
            + +  +  ++VDEYQD++   +RLL+AL    +   NL+ VGD  QSIY+F G S  ++
Sbjct: 416 TELQGRYDHVLVDEYQDVNRASVRLLRALKPDGK---NLWVVGDAKQSIYRFRGASSYNI 472

Query: 489 TTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAP 548
                  F       L   YR + +I    + F            N+FK +   +     
Sbjct: 473 DRFETEDFPGGKSLQLSMNYRSSQEICDTFSAFATTRMAASGFQANAFKGKSGVSPSFVS 532

Query: 549 NHSVEKILDEI 559
             S +  ++EI
Sbjct: 533 VESKDHEIEEI 543



 Score = 32.7 bits (73), Expect = 1e-04
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 27/107 (25%)

Query: 598 MTCHASKGKEADYVIILAVDEGQFPARVK---------------ALHLDDALNQSEDDFP 642
           MT H SKG E   + + ++  G  P   K                    DA++   D+  
Sbjct: 769 MTIHGSKGLEFKVLHLPSLTSGSIPRSAKQSRGLPPPDGMIEGPVFRGSDAVDAGHDE-- 826

Query: 643 YAEERRLFYVALTRAKEKVWV---TYNGNG-----SSFVQELLNDDY 681
             E+R LF+VAL+RA++ +++       NG     SSFV ++    Y
Sbjct: 827 --EQRCLFFVALSRAEDSLFLYAPNKKSNGHRQSRSSFVDDISGQVY 871