Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., DNA-dependent helicase II (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (260), Expect = 1e-26
 Identities = 101/343 (29%), Positives = 148/343 (43%), Gaps = 53/343 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV       LVLAGAGSGKT VLT R+++L+Q     P  IL V F   AA E
Sbjct: 10  LNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M ER++   G    R+ I TFH L  R++               D+ L Q++ I      
Sbjct: 70  MRERVEKVSGSNMGRMWIGTFHGLAHRLLR----------THYQDANLPQSFQI------ 113

Query: 320 WMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGL--SKKE- 376
                                L  DD+L       K +   EKQ       G    KK+ 
Sbjct: 114 ---------------------LDSDDQLRLIKRILKSLNLDEKQYPPRQAQGYINGKKDQ 152

Query: 377 -LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATE-YVEK----G 430
            L+ + +D   +P   + L +    YQ +Q+       +DF  ++ RA E ++ K     
Sbjct: 153 GLRPKHIDAGGFPIEQNLLKI----YQVYQESCDRAGLVDFAEILLRAHELWLNKPHILE 208

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
            ++  +K I+VDE+QD +  +   ++ L        N+  VGDD QSIY + G+ V+   
Sbjct: 209 HYQERFKNILVDEFQDTNAIQYAWIRVLAGST---ANVMIVGDDDQSIYGWRGAQVENLH 265

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
            F   F  +    L+  YR +  I   +N  I  NP +L K L
Sbjct: 266 RFLQDFPAAQTIRLEQNYRSSGNILNASNELIANNPDRLGKKL 308



 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V +  V+EG FP+++ A+   D L+         EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFPMVFMAGVEEGIFPSQM-AMDEGDRLD---------EERRLCYVGM 603

Query: 655 TRAKEKVWVTY 665
           TRA +++++TY
Sbjct: 604 TRAMKQLYITY 614



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 113 QELSRLKRLPSFLSHSSVEAWVAQVYADLKLMD-MTLHEAQ-KHLPTVF 159
           ++L  +  L +FLSH+++EA   Q  A    +  MTLH A+    P VF
Sbjct: 523 EDLEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVF 571