Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., UvrD/REP helicase (RefSeq) from Shewanella loihica PV-4

 Score = 79.3 bits (194), Expect = 5e-19
 Identities = 83/360 (23%), Positives = 167/360 (46%), Gaps = 40/360 (11%)

Query: 204 QQYAVLLND-DHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAE 262
           +Q  V+ +D  H L+ A  GSGKT+ L  RV  L+++ + +P  IL++ + + A    ++
Sbjct: 8   EQTRVVRHDAGHALIKAVPGSGKTTTLVKRVERLIKTGV-EPGSILILMYNKSATVSFSD 66

Query: 263 RLKNKIGLEAERL-HINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRHWM 321
           +LK  + L+++ +  + TFH L L+I+   E +   ++P                K+  +
Sbjct: 67  KLK--LALKSDAIPEVRTFHSLALKIVALAERQQ--LTP----------------KKMLI 106

Query: 322 TPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERL 381
           TP N++     L K   AY  G      ++E   +  + E  + +     ++  +     
Sbjct: 107 TPGNYR--YDELVKQ--AYRVGCSYDSGYIEQSDITDF-ETFVSRCRASAVTPADAAA-- 159

Query: 382 VDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE-KGKFRSPWKFIM 440
                + ++  E    + CY    ++L+      F   +  A   +       + +K I+
Sbjct: 160 --DPTFSKIKPEFIRAYGCYC---ELLEANGLRTFEDSMIEAVSLLRIYPGLVARFKHII 214

Query: 441 VDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG-FASRFAHS 499
           VDEYQD++  +  +++ L + +    ++  VGD  Q IY++ G+  D   G F  +F ++
Sbjct: 215 VDEYQDVNLVQHEMIRLLTKPDT---SVMVVGDLNQCIYEWRGAQPDFMDGLFEQQFPNT 271

Query: 500 TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKILDEI 559
           TV  L  T+RF  ++  +AN  I++N  +L +   S  +  +  V L  ++ + ++L  I
Sbjct: 272 TVFQLSCTFRFGHELSLIANSVIRRNSSKLTRLCVSHPSTPKTEVKLHLDNCLSEVLSAI 331



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 599 TCHASKGKEADYVIILAVDEGQFPARV--KALHLDDALNQSEDDFPYAEERRLFYVALTR 656
           T H SKG E D+VI++ +++ +FP         L    ++S  +     ERRLFYV +TR
Sbjct: 539 TIHGSKGLEWDHVILIGLNDCEFPGGKPDSGTQLPALTSESISNEELEVERRLFYVGITR 598

Query: 657 AKEKV 661
           AK ++
Sbjct: 599 AKHQL 603