Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score = 99.8 bits (247), Expect = 4e-25
 Identities = 95/344 (27%), Positives = 154/344 (44%), Gaps = 43/344 (12%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV+      L++AGAGSGKT+VLT R++YL+ +      QIL + F   AA E
Sbjct: 23  LNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAE 82

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M ER+   +G +A  + ++TFH   +RI+                    QA  I+ L   
Sbjct: 83  MRERVVGLVGEKARYMWVSTFHSTCVRILR------------------NQAALIEGLN-- 122

Query: 320 WMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQL-DQLAQMGLSKKELQ 378
               +NF  +    ++  +  +  D  L     +P+L+A     L ++L     +   L 
Sbjct: 123 ----SNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLT 178

Query: 379 ERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE-----KGKFR 433
           E   D DD  R  + +      Y  +Q+ L+  N +DF+ +I      ++        +R
Sbjct: 179 E---DSDDLARAVASV------YDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYR 229

Query: 434 SPWKFIMVDEYQDISPQRLRLLQALC--EQNQG--QCNLFAVGDDWQSIYQFAGSDVDLT 489
             ++ ++VDEYQD +  +  L++ L   + N G     L  VGD  QSIY F G+ +   
Sbjct: 230 RRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNI 289

Query: 490 TGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
             F   +  +    L+  YR    I + AN  I +N  +  K L
Sbjct: 290 EDFERDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRL 333



 Score = 45.8 bits (107), Expect = 8e-09
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 10/83 (12%)

Query: 598 MTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRA 657
           MT H +KG E   V +   ++G FP      H+    N +E     +EERRL YV +TRA
Sbjct: 596 MTLHTAKGLEFPVVFVTGWEDGMFP------HMRALDNPTE----LSEERRLAYVGITRA 645

Query: 658 KEKVWVTYNGNGSSFVQELLNDD 680
           +++++V+     SS+ Q +LN +
Sbjct: 646 RQRLYVSRAIVRSSWGQPMLNPE 668