Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., DNA helicase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  111 bits (277), Expect = 1e-28
 Identities = 103/343 (30%), Positives = 149/343 (43%), Gaps = 53/343 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV       LVLAGAGSGKT VLT R+++L+Q     P  IL V F   AA E
Sbjct: 10  LNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M ER++   G    R+ I TFH L  R++               D+ L Q++ I      
Sbjct: 70  MRERVEKVAGTNMGRMWIGTFHGLAHRLLR----------THFQDAGLPQSFQI------ 113

Query: 320 WMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGL--SKKE- 376
                                L  DD+L       K +   EKQ       G    KK+ 
Sbjct: 114 ---------------------LDSDDQLRLLKRILKSLNLDEKQYPPRQAQGYINGKKDQ 152

Query: 377 -LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATE-YVEK----G 430
            L+ + +D   +P   + L +    YQ +Q+       +DF  ++ RA E ++ K     
Sbjct: 153 GLRPKHIDAGGFPIEQNLLKI----YQVYQESCDRAGLVDFAEILLRAHELWLNKPHLLA 208

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
            ++  +K I+VDE+QD +  +   ++ L  Q     N+  VGDD QSIY + G+ V+   
Sbjct: 209 HYQERFKHILVDEFQDTNAIQYAWIRMLAGQT---ANVMIVGDDDQSIYGWRGAQVENLH 265

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
            F   F  +T   L+  YR    I   +N  I  NP +L K L
Sbjct: 266 RFLKDFPTATTIRLEQNYRSKGNILKASNALIANNPERLGKEL 308



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V +  V+EG FP+++ AL   D L+         EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFTMVFMAGVEEGIFPSKM-ALEEGDRLD---------EERRLCYVGM 603

Query: 655 TRAKEKVWVTY 665
           TRA EK+++TY
Sbjct: 604 TRAMEKLYITY 614



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 113 QELSRLKRLPSFLSHSSVEAWVAQVYADLKLMD-MTLHEAQ 152
           +EL  +  L +FLSH+++EA   Q  A    +  MTLH A+
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAK 563