Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 719 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 94.0 bits (232), Expect = 2e-23
 Identities = 97/379 (25%), Positives = 159/379 (41%), Gaps = 49/379 (12%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN +Q  AV   D   LV+AGAGSGKT  +  R++ LL+  +     ILL+ F R AA E
Sbjct: 8   LNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLERGVPA-SSILLLTFTRKAANE 66

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIIN-----RVEGKTVIMSPLANDSKLKQAWCID 314
           M +R    +G   + +   TFH     ++      R+EG+ + +   A DS      C D
Sbjct: 67  MLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLTIMDGA-DSVAAIQHCKD 125

Query: 315 WLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSK 374
            L           R  K   K           L S   N +L       LD++      +
Sbjct: 126 AL--------GIARGDKSFPKTQTVL-----SLLSKSRNKEL------PLDEVL-----R 161

Query: 375 KELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK----- 429
           +E    LV  D   R+           +A+ +   +   +D++ ++      + +     
Sbjct: 162 REAYHLLVHADGVSRIG----------EAYAEYRAEHGLLDYDDLLFEVERLLRERPDLL 211

Query: 430 GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLT 489
              R  +++IMVDEYQD +  + RL+Q L  +     N+ AVGDD QSIY F G++V   
Sbjct: 212 AHLRDRYRYIMVDEYQDTNLVQARLVQLLAGEGG---NVMAVGDDAQSIYAFRGANVQNI 268

Query: 490 TGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPN 549
             F   F  + +  L+  YR    +  + N  + + P    K L + +       ++ P 
Sbjct: 269 LSFPQFFPGTRIIKLEENYRSTQPVLDLTNAILAEAPQAYRKHLYTSREDGVLPQVVRPL 328

Query: 550 HSVEKILDEINRSTNKLKT 568
             + +    ++R +  L+T
Sbjct: 329 SDLTQASIVVSRVSELLRT 347



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 10/63 (15%)

Query: 599 TCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRAK 658
           T H++KG E   VIIL + E +FP+R      DD          + EERRL YVA TRA+
Sbjct: 536 TIHSAKGLEWSAVIILDLVEDRFPSRHAVTRADD----------FEEERRLMYVACTRAR 585

Query: 659 EKV 661
           E++
Sbjct: 586 ERL 588