Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA helicase II from Caulobacter crescentus NA1000

 Score =  116 bits (290), Expect = 5e-30
 Identities = 103/347 (29%), Positives = 157/347 (45%), Gaps = 58/347 (16%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV   +   LVLAGAG+GKT VLT R++++L +  A+P +IL V F   AA+E
Sbjct: 43  LNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAARE 102

Query: 260 MAERLKNKIGLEAERLH-INTFHQLGLRIINR------VEGKTVIMSPLANDSKLKQAWC 312
           M ER+ + IG EAE L  + TFH +  +I+ R      ++    I+    N+  LKQ   
Sbjct: 103 MRERITHIIGPEAEGLRWLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQL-- 160

Query: 313 IDWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGL 372
                                                  EN     W  + L Q+     
Sbjct: 161 ------------------------------------IEAENIDAKRWTPRILSQIIDGWK 184

Query: 373 SKKELQERLVDHDDYPRLNSE-LSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE--- 428
           ++    +R+   +     N + +SL    Y+ +Q+ L+  N  DF  ++           
Sbjct: 185 NRGWTPDRVPTSEAGEFANGKGISL----YRQYQERLRILNACDFGDLLLHNISLFTGHP 240

Query: 429 --KGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDV 486
               +F+  +K++MVDEYQD +  +   L+ L    QG+ N+  VGDD QSIY + G++V
Sbjct: 241 DVLDEFQQRFKYVMVDEYQDTNVAQYLWLRLLA---QGRQNVCCVGDDDQSIYGWRGAEV 297

Query: 487 DLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           D    F   F  + V  L+  YR  + I A A+  I  N  +L KTL
Sbjct: 298 DNILRFERDFPGAKVVRLECNYRSTEHILAAASGLITANKGRLGKTL 344



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 598 MTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRA 657
           MT H++KG E   V +   +EG FP++     +DD   +  +     EERRL YV +TRA
Sbjct: 583 MTLHSAKGLEFPLVFLPGWEEGVFPSQRS---MDDKGEKGLE-----EERRLAYVGITRA 634

Query: 658 KEKVWVTYNGN 668
           +E+  +++  N
Sbjct: 635 REEARISFVAN 645