Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

 Score =  115 bits (288), Expect = 8e-30
 Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 54/345 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q  AV L ++  L+LAGAGSGKT VL  R+++L+Q  LA P  IL V F   AA+E
Sbjct: 8   LNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAARE 67

Query: 260 MAERLKNKIGLEAERLHINTFHQL---GLRIINRVEGKTVIMSPLANDSKLKQAWCIDWL 316
           M  RL   + ++   + I TFH L    LR  +R  G       L    +L         
Sbjct: 68  MMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQL--------- 118

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAW-LEKQLDQLAQMGLSKK 375
                  +  KR  K                G ++++ K  A  L+  ++   + GL  K
Sbjct: 119 -------SAIKRLMK----------------GLNIDDEKYPAKNLQYFINNAKEQGLRPK 155

Query: 376 ELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE-----KG 430
           ++       D++ R   EL      Y+A+ Q  + +  +DF  ++ R  E +      + 
Sbjct: 156 DVDAT----DNFNRKFVEL------YEAYDQQCQREGVVDFPELLLRCYELLAHNPPLRA 205

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
            +++ +K I+VDE+QD +  +   L+ L  Q     ++FAVGDD QSIY F G++V    
Sbjct: 206 HYQARFKHILVDEFQDTNKLQYAWLKLLAGQTN---SIFAVGDDDQSIYAFRGANVGNMR 262

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNS 535
            F   F    +  L+  YR +  I   AN+ I  N  +L K L +
Sbjct: 263 DFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLRT 307



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HA+KG E   V I  ++EG FP    A+  D             EERRL YVA+
Sbjct: 588 VQLMTVHAAKGLEFTAVFITGLEEGLFPHENSAMESDGL----------EEERRLMYVAI 637

Query: 655 TRAKEKVWVTY 665
           TRAKE++++++
Sbjct: 638 TRAKERLYLSF 648



 Score = 25.8 bits (55), Expect = 0.008
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 121 LPSFLSHSSVEAWVAQVYADLKLMD-MTLHEAQ-KHLPTVFDT-----LLPW---LLDTS 170
           L  FLSH+S+EA   Q  A  + +  MT+H A+      VF T     L P     +++ 
Sbjct: 565 LAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENSAMESD 624

Query: 171 ATLYERNKAWLEIERANWTVLFSQCESSPLNVSQQYAV 208
               ER   ++ I RA   +  S  +S  L+   +Y +
Sbjct: 625 GLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNI 662