Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 74.7 bits (182), Expect = 2e-17
 Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 3/98 (3%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN SQ  AV  ND  +LV+AGAGSGKT VLT +++YLL++   +P  IL + F   AA+E
Sbjct: 9   LNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGY-QPWNILALTFTNKAARE 67

Query: 260 MAERLKNKIGLEAER-LHINTFHQLGLRIINRVEGKTV 296
           M +R+  ++G+E  R L + TFH +  RI+ R E K +
Sbjct: 68  MKDRIARQVGMERARYLWMGTFHSVFSRIL-RAEAKYI 104



 Score = 70.1 bits (170), Expect = 4e-16
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 3/124 (2%)

Query: 431 KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
           ++R  +++++VDEYQD +  +  ++  L ++NQ  C    VGDD QSIY F G+D+D   
Sbjct: 215 RYREQFRYVLVDEYQDTNYAQHSIVLQLTKENQRVC---VVGDDAQSIYSFRGADIDNIL 271

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNH 550
            F   + ++ V  L+  YR    I   AN  I++N  Q+ K + S K + +   +     
Sbjct: 272 YFTKVYPNTKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFSEKERGEPIGVFQAYS 331

Query: 551 SVEK 554
            VE+
Sbjct: 332 DVEE 335



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 14/74 (18%)

Query: 594 KLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYA--EERRLFY 651
           K+  MT H++KG E   V ++ ++E  FP+ +              D P A  EERRLFY
Sbjct: 564 KITLMTVHSAKGLEFKNVFVVGLEENLFPSGMVG------------DSPRALEEERRLFY 611

Query: 652 VALTRAKEKVWVTY 665
           VA+TRA+E  ++++
Sbjct: 612 VAITRAEEHCYISF 625