Pairwise Alignments

Query, 984 a.a., TMAO reductase system sensor histidine kinase/response regulator TorS from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  233 bits (593), Expect = 6e-65
 Identities = 165/523 (31%), Positives = 274/523 (52%), Gaps = 34/523 (6%)

Query: 315 DASNQVTTAAVSKLSNT------LYDAQLILTVLGLLGLVIVVWIVWKVVYRSVIQRLDQ 368
           D SN      VS + N        + A +   ++ L+G+ + +   +++V ++V Q +  
Sbjct: 169 DNSNAALLGYVSMMLNKEKALLEQHRAAVAAFIIVLIGVQLNLLFTFRLV-KNVTQPITD 227

Query: 369 HTAALLSVAKGQLDVDVSTQGNDELGQMGQAIAHARDTAKALKVVAESEVLAKRELQQHK 428
               +  + +G+LD  +      EL  + + I            +A S       L ++ 
Sbjct: 228 MVKLVGKIREGKLDARLEGNLIGELDLLNRGI----------NAMAAS-------LSEYH 270

Query: 429 EHLEELVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGV 488
           + +++ ++Q T  L E   ++  + +   +A++ A++ASR KS FLA MSHE+RTP+NGV
Sbjct: 271 DEMQQNIDQATSDLRETLEQIEIQNIALDRAKKDAQEASRIKSEFLANMSHELRTPLNGV 330

Query: 489 LGTARLLQDTTLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRL 548
           +G AR L  T L S+Q  Y++ I RS  SLL I+ND+LD+SK+EA  + +    F L   
Sbjct: 331 IGFARQLLKTPLHSSQMEYIKTIERSATSLLQIINDILDFSKLEANKMVLETMPFGLRAS 390

Query: 549 VSETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRI 608
           + +T  L+   A  KG+     +D +V +   GD +R+GQV+ NL+GN IKFT++G V +
Sbjct: 391 LEDTINLLAGSAHAKGLEFVVDVDANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHL 450

Query: 609 RIRLA---PDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAG-RRKLGGTGLGLAISRK 664
           +I LA    +   +R  V D+GIGI  E+Q  LF AF QAD+   R+ GGTGLGL I+++
Sbjct: 451 KISLASLEDNNLTLRCEVTDTGIGIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKR 510

Query: 665 L-VQAMGGELQLASQLGQGSCFWFTLPLPVGEPVETPALAVDDVPVANVLLVEDNEVNCL 723
           L VQ MGG +   S++G+GS FWFT+PL +        L ++ +   +VLL E  ++   
Sbjct: 511 LVVQMMGGRIGFHSEVGKGSSFWFTVPLQLSPFPVHDTLPLEKLIGHSVLLFEPRKLTRE 570

Query: 724 VAQGFLTSLGHQVTLAKSVQEAKLCFQQQRFDIALLDIHLPDGNGVDLLRDLRQMEDSIH 783
                L      VTLA +  E +     + +D  LL     + +  DL R L +++D   
Sbjct: 571 SIARKLKDWHMMVTLASNEDELERHLDDRHYDAILLSGQSCE-SCEDLQRHLSRVKDHTG 629

Query: 784 NAVIPFIAVSAHVFNEEVAGYLAAGFDGYLPKPLVKEQLAAML 826
           + ++    +   V+ +E+  ++    D  L  P+ + +LA  L
Sbjct: 630 SLLLLNDCLDPEVYTQEMEPFV----DLVLQLPVSELKLAQNL 668



 Score = 86.7 bits (213), Expect = 7e-21
 Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 41/279 (14%)

Query: 711 NVLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQEAKLCFQQQRFDIALLDIHLPDGNGVD 770
           NVL V+DN  N  +    L  L   V    S  +A    + + FD+  +DI +P  +GV 
Sbjct: 694 NVLAVDDNLANLKLIDTLLKELVANVVAVSSGDQAVALAKSRSFDLIFMDIQMPGTDGVT 753

Query: 771 LLRDLRQMEDSIHNAVIPFIAVSAHVFNEEVAGYLAAGFDGYLPKPLVKEQLAAMLRQQL 830
             R +RQ  DS+ N   P IAV+AH  NEE     A+G DGYLPKP+ +  L  ++ + L
Sbjct: 754 ATRLIRQ--DSL-NRNTPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVISRWL 810

Query: 831 TAKSGDDADMRDKAESHDTSSIFDNGQPQGEPSPEAQAVRKEWVAVMDHAKFEQDVQILG 890
           T         R K    D++++                    W   +  A  ++D+ I  
Sbjct: 811 T---------RPKFTHFDSNTL-------------------NWELCLSQANQKEDLAIDM 842

Query: 891 VEKMREIVGYFEQGCAEFFALCEAERDNDAQIKSQAHKLKGSAGALWLTQLYQLCQQIEK 950
           ++ M E +     G      L  A  DN++ + +  HKL G++    +    +LCQQIE 
Sbjct: 843 LKMMLESL----PGTVNDIELAMARSDNESMLYT-VHKLHGASCYCGVPTTQKLCQQIES 897

Query: 951 -----ADSPAAAYQQTPLVDAVENAKQALRNALDLLSKE 984
                AD      +   L+D +   + A    +  +S E
Sbjct: 898 ALKGGADVADVEPEILELLDELTKVESAATQVISQMSAE 936