Pairwise Alignments

Query, 984 a.a., TMAO reductase system sensor histidine kinase/response regulator TorS from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  228 bits (580), Expect = 3e-63
 Identities = 136/338 (40%), Positives = 196/338 (57%), Gaps = 9/338 (2%)

Query: 447  HKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQH 506
            HK N+  L  AK  Q AE A+  KS FLA MSHEIRTPMN ++G  +L   T LT  Q  
Sbjct: 701  HKSNEVALLEAK--QDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQAD 758

Query: 507  YVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGIT 566
            Y+     S +SLL I+ND+LD+SKIEAG LE+    F L +++    +L   +A+EKG+ 
Sbjct: 759  YLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVE 818

Query: 567  LTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQ---GIRFAV 623
            L  +         +GD +R+GQVL N++ N +KFT  GE+ +      +      ++F V
Sbjct: 819  LLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWV 878

Query: 624  EDSGIGIAEEEQATLFDAFTQADAG-RRKLGGTGLGLAISRKLVQAMGGELQLASQLGQG 682
             D+GIGI++E+Q +LFDAF QAD    RK GGTGLGL+IS+ LV  MGG +Q+ S+LG G
Sbjct: 879  RDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVG 938

Query: 683  SCFWFTLPLPVGEPVETPALAVDDVPVANV--LLVEDNEVNCLVAQGFLTSLGHQVTLAK 740
            S F FT+   + E  E   L V +V + N+  L+V+DN     +    +      V  A 
Sbjct: 939  STFSFTISFEIAEEAEVKPLIVPEV-IGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTAS 997

Query: 741  SVQEAKLCFQQQRFDIALLDIHLPDGNGVDLLRDLRQM 778
            +  EA    + +  D+ LLD  +P+ +GV++++ L  M
Sbjct: 998  NGAEALYKLEHRPVDLLLLDWMMPEMDGVEVIKALDAM 1035



 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 7/140 (5%)

Query: 693  VGEPVETPALAV----DDVPVANVLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQEAKLC 748
            + +P   PA A+    +      +LLVEDN +N  VA   L S G++V +A++ Q A   
Sbjct: 1089 IDKPKINPAAALPVEGNATGTGQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDM 1148

Query: 749  FQQQRFDIALLDIHLPDGNGVDLLRDLRQMEDSIHNAVIPFIAVSAHVFNEEVAGYLAAG 808
               +++D  L+DI +P  +G+   ++LR+         +P IA++AH  + +    LAAG
Sbjct: 1149 VDAKQYDAVLMDIQMPVMDGLTATKELRK---RYTKEELPVIAMTAHAMSGDREKSLAAG 1205

Query: 809  FDGYLPKPLVKEQLAAMLRQ 828
             + ++ KP+V  +L   L Q
Sbjct: 1206 MNAHITKPIVLNELFDTLAQ 1225