Pairwise Alignments

Query, 984 a.a., TMAO reductase system sensor histidine kinase/response regulator TorS from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella oneidensis MR-1

 Score =  230 bits (586), Expect = 4e-64
 Identities = 146/428 (34%), Positives = 233/428 (54%), Gaps = 24/428 (5%)

Query: 341 VLGLLGLVIVVWIVWKVVYRSVIQRLDQHTAALLSVAKGQLDVDVSTQGNDELGQMGQAI 400
           ++ L+G+ + +   +++V ++V Q + +    +  + +G+LD  +           G  I
Sbjct: 190 IIVLIGVQLNLLFTFRLV-KNVTQPITEMVRVVAKIREGKLDARLQ----------GNLI 238

Query: 401 AHARDTAKALKVVAESEVLAKRELQQHKEHLEELVEQRTCQLSEMNHKLNQEVLNHAKAR 460
                  + +  +A S       L ++ + +++ ++Q T  L E   ++  + +    A+
Sbjct: 239 GELDLLKRGINAMAGS-------LSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAK 291

Query: 461 QQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGRSLLA 520
           ++A +ASR KS FLA MSHE+RTP+NGV+G AR L  T L S+Q  Y+  I RS  +LLA
Sbjct: 292 KRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHSSQVDYINTIERSATNLLA 351

Query: 521 ILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQ 580
           I+ND+LD+SK+EAG + +    F L   + ET  L+   A+ KG+ L   I  +V     
Sbjct: 352 IINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVN 411

Query: 581 GDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRL---APDGQGIRFAVEDSGIGIAEEEQAT 637
           GD +R+ Q++NNLVGN IKFTD G V +++ L     +   +R  V D+GIGI E +Q  
Sbjct: 412 GDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDF 471

Query: 638 LFDAFTQADAG-RRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPLPVGEP 696
           LF AF QAD+   R+ GGTGLGL I+++LV  MGG++   S + +GS FWFTLPL +G+ 
Sbjct: 472 LFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPLGLGQF 531

Query: 697 VETPALAVDDVPVANVLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQ--EAKLCFQQQRF 754
               +L ++ +    VL  E   +   V    L     +VT  + +   +  L   + +F
Sbjct: 532 QIGDSLPLEKLQNKTVLFYEPRVLTHSVISRQLKQWDTKVTHHQHIPSLQTTLSTTEHQF 591

Query: 755 DIALLDIH 762
           D  LL  H
Sbjct: 592 DYVLLSCH 599



 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 69/278 (24%), Positives = 112/278 (40%), Gaps = 41/278 (14%)

Query: 712 VLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQEAKLCFQQQRFDIALLDIHLPDGNGVDL 771
           VL V+DN  N  +    L  L   V    S +EA    + + FD+  +DI +P  +G+  
Sbjct: 684 VLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVKQAKTRTFDLIFMDIQMPGTDGISA 743

Query: 772 LRDLRQMEDSIHNAVIPFIAVSAHVFNEEVAGYLAAGFDGYLPKPLVKEQLAAMLRQQLT 831
            + +RQ      N   P IAV+AH   EE    L +G DGYLPKP+ +  L A + + +T
Sbjct: 744 TKQIRQ---GSMNRNTPIIAVTAHAIAEERELILGSGMDGYLPKPIDEAALKAEINRWIT 800

Query: 832 AKSGDDADMRDKAESHDTSSIFDNGQPQGEPSPEAQAVRKEWVAVMDHAKFEQDVQILGV 891
                    R K    D  ++                    W   +  A  +     L +
Sbjct: 801 ---------RPKFTHFDLHTL-------------------NWDLCLTQANHKSG---LAL 829

Query: 892 EKMREIVGYFEQGCAEFFALCEAERDNDAQIKSQAHKLKGSAGALWLTQLYQLCQQIEKA 951
           + +R ++    Q  +   A     +++   + S  HKL G++    +    +LCQ+IE A
Sbjct: 830 DMLRMLLDSLPQTVSAIEA--ALSQNDQVTMLSTIHKLHGASCYCGVPTTQRLCQEIESA 887

Query: 952 DSPAAAYQQ-----TPLVDAVENAKQALRNALDLLSKE 984
               A  +        L+D +   + A +  L  LS E
Sbjct: 888 LKREARVEDLEPEILELLDELTKVESAAKQVLSQLSAE 925