Pairwise Alignments

Query, 789 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (262), Expect = 8e-27
 Identities = 88/270 (32%), Positives = 132/270 (48%), Gaps = 35/270 (12%)

Query: 535 QAEVEERQRAEAHLKKTQGELIQAAKMAVVGQTMTSLAHELNQPLSAM--SAYLFSAR-- 590
           Q  V   +  E H  +   E  +A+++A +G+    +AHE+N P   +  +  LFSA   
Sbjct: 386 QVVVLLEESTEQHKLRQANE--EASRLASLGELSAGIAHEINNPTGLILHAISLFSAAIK 443

Query: 591 --------------------LALEEAPQAQLATSLDHIENLTERMGKIVNSLRHFARKN- 629
                               LA  +A + ++A S D IE   +R+ +IVN L+ +A  N 
Sbjct: 444 DLNPAANYYQQQNPFWQIAGLAPSQAME-EMAVSSDTIEEAAKRISRIVNDLKRYALPNL 502

Query: 630 SSDESLQPVRLNSVVEQALVLVQTKAKRQQIKLINTLPDDLMVMADALSLEQVLINLIVN 689
           + D +L  V LN VVE AL L   + K +Q+  +  LP    +M DA  L QVLINLI N
Sbjct: 503 TQDHTL--VCLNEVVEVALRLTANQTKTRQVTKLLHLPSP-RIMGDAQQLHQVLINLIQN 559

Query: 690 GCDASTTFAQPWVKLIALGTEQGMQRIAVIDSGQGFEHEVVDKLFTPFTTTK--EVGLGL 747
            C A    A      I+    QG   I V D+G G +   + ++  PF TT+  E G GL
Sbjct: 560 ACHACA--AHEGSIQISTQVSQGRALIKVNDNGCGMDSATLKRITEPFFTTRRTEGGSGL 617

Query: 748 GLSICQSLVEKMQGRIALASNLEKGAMVIL 777
           GLS+C  ++++ QG++ + S   KG  + L
Sbjct: 618 GLSVCSRIIKEHQGQMQIHSAPGKGTRIQL 647