Pairwise Alignments

Query, 789 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  127 bits (320), Expect = 2e-33
 Identities = 83/276 (30%), Positives = 144/276 (52%), Gaps = 20/276 (7%)

Query: 516 LEQRVKEKTQSLREKNRELQAEVEERQRAEAHLKKTQGELIQAAKMAVVGQTMTSLAHEL 575
           LE +V+E+T+SL++K  ELQ  V       A L +T+ +L+   K+  +G+    +AHE+
Sbjct: 427 LEMKVEERTRSLQDKTLELQRNV-------ALLNETRQQLVTNEKLTALGELTAGIAHEI 479

Query: 576 NQPLSAMSAYLFSARLALEEAPQAQLATSLDHIENLTERMGKIVNSLRHFARKNSSDESL 635
           N P + +   +   R  L +  +  +   +D +     R+  I+ SL  ++R    +  L
Sbjct: 480 NNPTAVILGNMELLRYELGDKAEV-VKEEIDLVIQQVGRISTIIRSLLQYSRPGEFNAPL 538

Query: 636 QPVRLNSVVEQALVLVQTKAKRQQIKLINTLPDDLMVMADALSLEQVLINLIVNGCDAST 695
           +   +  ++E+ LVLV+   ++Q++ LI  L     V  +   L QVLINL+VN   A  
Sbjct: 539 EMHPITPIIEEMLVLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAAHAMD 598

Query: 696 TFAQPWVKL-------IALGTEQGMQRIAVIDSGQGFEHEVVDKLFTPFTTTKEVGLGLG 748
              + WV+        IA+G      +I V D G G E E + ++F PF TT++ G GLG
Sbjct: 599 GKGRIWVRTYDWVQQDIAIGV-----KIEVEDEGSGIEPEQLGRIFDPFYTTRKDGTGLG 653

Query: 749 LSICQSLVEKMQGRIALASNLEKGAMVILELQQDEK 784
           LS+   +++++ G I ++S L KG++  + L  + K
Sbjct: 654 LSLSYGIIKRIGGTIEVSSVLGKGSIFTIGLYHEAK 689