Pairwise Alignments

Query, 789 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 910 a.a., PAS domain S-box from Sphingomonas koreensis DSMZ 15582

 Score =  116 bits (290), Expect = 6e-30
 Identities = 80/274 (29%), Positives = 138/274 (50%), Gaps = 6/274 (2%)

Query: 504 TDVTDQEHANRLLEQRVKEKTQSLREKNRELQAEVEERQRAEAHLKKTQGELIQAAKMAV 563
           TD  D+E     +E  V E T      +      + E+   +A L +  GEL+ A++++ 
Sbjct: 618 TDGRDREGNAMPVELVVGETTIGNEHISIAFVRSLREQIATQARLNELHGELLHASRVSA 677

Query: 564 VGQTMTSLAHELNQPLSAMSAYLFSARLALEEAPQA-QLATSLDHIENLTERMGKIVNSL 622
           +G+    LAHELNQPL+A + +L +A + L     A QL   +D       R G+I+  +
Sbjct: 678 MGEMGAGLAHELNQPLTATANFLGAAHMRLGMGGSAEQLRELVDLANQEVLRAGEIIRRM 737

Query: 623 RHFARKNSSDESLQPVRLNSVVEQALVLVQTKAKRQQIKLI-NTLPDDLMVMADALSLEQ 681
           R F  +   D  ++P+ +N+++   L L  +  +   + LI   +     V  D + ++Q
Sbjct: 738 RAFVARGDLD--IRPLAINTLIADGLQLAWSGTRHAGVNLIYQPVATAREVAVDKIQIQQ 795

Query: 682 VLINLIVNGCD--ASTTFAQPWVKLIALGTEQGMQRIAVIDSGQGFEHEVVDKLFTPFTT 739
           VL+N+I N  +  A+     P + + A+        I ++D+G GF   ++ + F  F +
Sbjct: 796 VLVNIINNSLETFAADGTKNPEIIISAVEASDDHVLIRLLDNGPGFPTSIIGRPFETFMS 855

Query: 740 TKEVGLGLGLSICQSLVEKMQGRIALASNLEKGA 773
           T+  GLGLGLSIC+ +VE   G + L++  E GA
Sbjct: 856 TRANGLGLGLSICRRIVEAHGGTVTLSNRPEGGA 889