Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  212 bits (540), Expect = 2e-59
 Identities = 136/437 (31%), Positives = 239/437 (54%), Gaps = 31/437 (7%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           +VL+++DD  VL      +++  +    V    +A+  +  ++ G+V+ D+ +P + G+E
Sbjct: 6   SVLIVEDDPHVLLGCKQALTLEDIPCIGVGSAEEALERVDDNFAGIVISDIRLPGIDGLE 65

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR- 141
           LL ++KA D  +PV++ITGHGDI MAV A++ GA DF+EKP +P +L+ + ++ LE R  
Sbjct: 66  LLTRLKARDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSL 125

Query: 142 ----SFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
               S + ++L    S++  ++G+S  M+ +R+ +A  A  + +V+I GE+G G+  +A 
Sbjct: 126 AREVSSLRRQLAERDSLEGRIIGRSPAMQHLRALIANVADTSANVLIEGETGTGKELVAR 185

Query: 198 LIHQ---------LTTNNGHLP----WVELVASAKTEWSTVEP----KVQESAGGTLLID 240
            +H          +  N G LP      E+       ++        K++ + GGTL +D
Sbjct: 186 CLHDFSRRHDKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLD 245

Query: 241 HIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPELYY 293
            +E +   +Q  +++ L  +  ERL   ++     RVIA      +++    Q   +LYY
Sbjct: 246 EVESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMGRTGQFRSDLYY 305

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN   +++P LR+R +DI  LF +FL+QS  +  + +P ++   L+ L +H WPGNVRE
Sbjct: 306 RLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRTVPELDNQTLSNLMSHDWPGNVRE 365

Query: 354 LRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANY 413
           LRNVAE YA+G+   A K    +         E V+ +E+ ++ DAL    G +  A+  
Sbjct: 366 LRNVAERYALGLP--AFKRSGASGGNQGLAFAEAVEAFERNLLVDALQRSGGNLTQASQE 423

Query: 414 LQVPRKKLYLRMKKHGL 430
           L + +  L+ ++KK+GL
Sbjct: 424 LGMAKTTLFDKVKKYGL 440