Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., Type IV fimbriae expression regulatory protein PilR from Pseudomonas fluorescens FW300-N2E2

 Score =  147 bits (370), Expect = 9e-40
 Identities = 129/457 (28%), Positives = 226/457 (49%), Gaps = 54/457 (11%)

Query: 18  SKMKSTVLLIDDDQDV---LDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMY 74
           ++ +  +L++DD+ D+   LD  L  M +   +AK +    +A + +  +   + L DM 
Sbjct: 3   TRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNL---AEAQNLLAGEAFDLCLTDMR 59

Query: 75  MPQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK 134
           +P   G+EL++ I+    ++PV +IT +G +  A++A+K GA DFL KP++  +L  L+ 
Sbjct: 60  LPDGTGLELVQHIQQRYPQLPVAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVT 119

Query: 135 QHLELRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
             L L             +++R L+G S  M  +R  + + A     V I GESGCG+  
Sbjct: 120 SALRL-----PPVATPGTTLERSLLGDSPPMLSVRKQIEKLARSQAPVYISGESGCGKEL 174

Query: 195 IAYLIHQ---------LTTNNGHLPWVELVASA-----KTEWS-TVEPK---VQESAGGT 236
           +A LIH+         +  N G +P  EL+ S      K  +S  +E K    Q + GGT
Sbjct: 175 VARLIHEQGPRANLPFVPVNCGAIP-TELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGT 233

Query: 237 LLIDHIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQL 287
           L +D +  L   +Q  +++++  QE+  R            R++    +  +  +A  + 
Sbjct: 234 LFLDEVADLPLAMQVKLLRAI--QEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRF 291

Query: 288 LPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQW 347
             +LYY LN  ++ VP LR+R +DI  L ++ L++     G P   + P  L  LR++++
Sbjct: 292 RQDLYYRLNVIELRVPPLRERREDIELLANHMLQRLAANTGSPPVKLHPQALDALRSYRF 351

Query: 348 PGNVRELRNVAE-LYAI--------GIVKLA---GKERLYNQEEM-LSPLDELVDDYEKQ 394
           PGNVREL N+ E  Y +          ++LA   G     N + M +  L++ ++D E++
Sbjct: 352 PGNVRELENMLERAYTLCEQQQIEADDLRLAEGNGSAEPGNPDLMQVDNLEDYLEDVERK 411

Query: 395 VIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
           +I  AL         AA  L++  + +  R+KK GL+
Sbjct: 412 LILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD 448