Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  142 bits (359), Expect = 2e-38
 Identities = 128/454 (28%), Positives = 217/454 (47%), Gaps = 54/454 (11%)

Query: 21  KSTVLLIDDDQDV---LDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQ 77
           +  VL++DD+ D+   L+  L  M +  L+A+ V    +A S +  +   + L DM +P 
Sbjct: 6   RQKVLIVDDEPDIRELLEITLGRMKLDTLSARNV---GEARSLLAQERFDLCLTDMRLPD 62

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
             G+EL++ I+     +PV +IT +G +  A+ A+K GA DFL KP+N  +L  L+   L
Sbjct: 63  GTGLELVQHIQLTHPYVPVAMITAYGSLDTAINALKAGAFDFLTKPVNLTRLRELVVSAL 122

Query: 138 ELRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
            L  +        + ++ R L+G S  M  +R+ + + A     V I GESG G+  +A 
Sbjct: 123 RLPVAGDA-----ASAIDRRLLGDSVPMRNLRTQIDKLARSQAPVYISGESGSGKELVAR 177

Query: 198 LIHQLTTNNGHLPWV--------------ELVASAKTEWS-TVEPK---VQESAGGTLLI 239
           LIH+    +G  P+V              E     K  +S  +E K    Q + GGTL +
Sbjct: 178 LIHEQGPRSGQ-PFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFL 236

Query: 240 DHIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPE 290
           D +  L   +Q  +++++  QE+  R            R++    +  +  +A  +   +
Sbjct: 237 DEVADLPLAMQVKLLRAI--QEKAVRSIGGQQEAIINVRILCATHRDLDAEVAAGRFRQD 294

Query: 291 LYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGN 350
           LYY LN  ++ VP LR+R DDI  L  + LK+     G P  +++P  L  L+ +++PGN
Sbjct: 295 LYYRLNVIELRVPPLRERRDDIELLASHVLKRLAAGSGLPAVHLQPQALDALKHYRFPGN 354

Query: 351 VRELRNVAE-LYAIGIVKL--AGKERLYNQE----------EMLSPLDELVDDYEKQVIE 397
           VREL N+ E  Y +   K   A   RL +              +  L++ +++ E+++I 
Sbjct: 355 VRELENMLERAYTLCENKQIEASDLRLTDGNCSADTGLPDLTKIDNLEQYLENVERKLIL 414

Query: 398 DALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
            AL         AA  L +  + +  R+KK GL+
Sbjct: 415 QALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD 448