Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  142 bits (358), Expect = 2e-38
 Identities = 127/450 (28%), Positives = 212/450 (47%), Gaps = 47/450 (10%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
           +   L+IDD+ D+ +     +    L  ++  +  +A   +  +   + L DM +P   G
Sbjct: 23  RQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSG 82

Query: 81  MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
           +EL++ I+    ++PV +IT +G +  A+ A+K GA DFL KP++  +L  L+   L LR
Sbjct: 83  LELVQYIQQQHPQLPVAMITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLR 142

Query: 141 RSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIH 200
               E        V   L+G S  M+ +R  + + A     V I GESG G+  +A LIH
Sbjct: 143 APATEAP------VDSRLLGGSPPMKVLRKQIGKLARSQAPVYISGESGSGKELVARLIH 196

Query: 201 Q---------LTTNNGHLPWV----ELVASAKTEWS-TVEPK---VQESAGGTLLIDHIE 243
           +         +  N G +P      E     K  +S  +E K    Q ++GGTL +D + 
Sbjct: 197 EQGPRAEKTFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAASGGTLFLDEVA 256

Query: 244 LLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPELYYL 294
            L   +Q  +++++  QE+  R            R++    +     +A  +   +LYY 
Sbjct: 257 DLPLPMQVKLLRAI--QEKAVRAVGGAQEVMVDVRILCATHKDLAAEVAAGRFRQDLYYR 314

Query: 295 LNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVREL 354
           LN  ++ VP LR+R +DI  L    L++   + G  + ++ P  LA L ++++PGNVREL
Sbjct: 315 LNVIELRVPPLRERREDIRLLADAMLRRLAQECGDSIAHLHPEALAKLESYRFPGNVREL 374

Query: 355 RNVAE-LYAI--GIVKLAGKERL-------YNQEEMLSPLDELVD---DYEKQVIEDALF 401
            N+ E  Y +  G    AG  RL        N E  L+ +D L D   + E+++I  AL 
Sbjct: 375 ENMLERAYTLCDGEEIKAGDLRLADSPGSSENGEASLAQIDNLEDHLEEIERKLIMQALE 434

Query: 402 LFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
                   AA  L +  + +  R+KK GL+
Sbjct: 435 ETRWNRTAAAQRLGLTFRSMRYRLKKLGLD 464