Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  227 bits (578), Expect = 7e-64
 Identities = 151/444 (34%), Positives = 238/444 (53%), Gaps = 37/444 (8%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
           ++ VLLIDDD  +  +    + +AGL   ++ D  +  + +  DW GVV+ D+ MP + G
Sbjct: 10  QTQVLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADWPGVVVSDIRMPGIDG 69

Query: 81  MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
           +ELL+Q++A D ++PVI+ITGHGDI +AV+A++ GA DFLEKP     LL  +++ L LR
Sbjct: 70  LELLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALR 129

Query: 141 RSFIEQKLLLSRSVKRE-----LVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTI 195
           +  ++ + L      R+     L+G+S  M ++R  +   A     V+I+GE+G G+  +
Sbjct: 130 QLVLDNRSLRLALADRQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGETGAGKEVV 189

Query: 196 AYLIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGGT 236
           A  +H L +N  + P+V + A A  E S VE                    K + + GGT
Sbjct: 190 ARALHDL-SNRRNGPFVAINAGALAE-SVVESELFGHEPGAFTGAQKRRIGKFEFANGGT 247

Query: 237 LLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLP 289
           L +D IE +S +VQ  +++ L  +  ERL   ++     RVIA   +       Q +   
Sbjct: 248 LFLDEIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRA 307

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +LYY LN   + +P LR+R +DI  LF +F +    + G P+  ++P   A L  H WPG
Sbjct: 308 DLYYRLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALLRHAWPG 367

Query: 350 NVRELRNVAELYAIGI---VKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGR 406
           NVREL+N AE +A+G+   +   G E   +       L E V+ +E+ +I   L    G 
Sbjct: 368 NVRELQNTAERFALGLGLGLDQPGAEPT-SSVAGTGNLSEQVEAFERALIAAELNRPHGS 426

Query: 407 VADAANYLQVPRKKLYLRMKKHGL 430
           +   A  L VPRK L+ +++KHGL
Sbjct: 427 LRSVAEALGVPRKTLHDKLRKHGL 450