Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) from Pseudomonas stutzeri RCH2

 Score =  218 bits (555), Expect = 3e-61
 Identities = 140/450 (31%), Positives = 236/450 (52%), Gaps = 37/450 (8%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M   V+ IDD+  +  +    + ++G   +      +A++ +  D+ GV++ D+ MP L 
Sbjct: 1   MSGQVIFIDDEAAIRQAVQQWLELSGFQVRTFSRAREALTALDRDFPGVLISDVRMPDLD 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+ LL+Q+ A+D  +PVI++TGHGD+PMAV+A++ GA DF+EKP  P +LL  +++ ++ 
Sbjct: 61  GLGLLEQLVALDADLPVIMVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAMDK 120

Query: 140 RRSFIEQKLLLSR-----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           RR   E + L  +      ++ +L+G S  M+ +R  V + A  + +V+I GE+G G+  
Sbjct: 121 RRLVCENRQLREQFARKGRIESQLLGVSRAMDNLRRQVLELAGTDVNVLIRGETGSGKEQ 180

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKTE--------------WSTVEPK----VQESAGGT 236
           +A  +H  +   G  P+V L  +A  E              ++  + K    ++ +AGGT
Sbjct: 181 VARCLHDFSPRAGG-PFVALNCAAIPETIFESELFGHESGAFTGAQGKRIGRIEHAAGGT 239

Query: 237 LLIDHIEL--LSEEVQRNVVQSLLNQERLNRPRT-----RVIAVIDQPPEQLIAQNQLLP 289
           L +D IE   L+++V+   V      ERL   R+     RVI+       + +   +   
Sbjct: 240 LFLDEIESMPLAQQVKLLRVLQEKTLERLGSNRSIEVDLRVISAAKPDLLEEVRGGRFRE 299

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +L Y LN  ++ +P LR+R +DI  LF +F  Q+  + G+  P V P  L  L AH WPG
Sbjct: 300 DLLYRLNVAELHIPPLRERREDIPLLFEHFASQAAQRHGRAAPPVTPGELTQLLAHDWPG 359

Query: 350 NVRELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVAD 409
           NVREL N AE +A+G+   A              L E ++ +E Q + +AL    G + +
Sbjct: 360 NVRELINAAERHALGLSAPA------PASSGGQSLAEQMEAFEAQCLHNALQQCKGNITE 413

Query: 410 AANYLQVPRKKLYLRMKKHGLEKDAFKARG 439
               LQ+PR+ L  +M++HGL +  +   G
Sbjct: 414 VMTQLQLPRRTLNEKMQRHGLSRSDYLPAG 443