Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  209 bits (532), Expect = 1e-58
 Identities = 138/439 (31%), Positives = 236/439 (53%), Gaps = 35/439 (7%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           TVL+++DD  VL      +++  + ++ V    +A+  I  ++ G+V+ D+ +P + G+E
Sbjct: 8   TVLIVEDDPHVLLGCQQALALEDIASEGVSSAEEALKRIDDNFAGIVISDIRLPGIDGLE 67

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE---- 138
           LL ++KA D  +PV++ITGHGDI MAV A++ GA DF+EKP +P +L+ + ++ LE    
Sbjct: 68  LLSRLKARDSSLPVVLITGHGDITMAVNAMRDGAYDFMEKPFSPERLVDVTRRALEQRGL 127

Query: 139 LRRSFIEQKLLLSR-SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
            R  +  +K L  R S++  ++G+S  M+ +R+ +A  A  + +V+I GE+G G+  +A 
Sbjct: 128 AREVWALRKQLAERDSLEGRIIGRSPAMQNLRALIANVADTSANVLIEGETGTGKELVAR 187

Query: 198 LIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGGTLL 238
            +H  +       +V L      E S  E                    K++ +  GTL 
Sbjct: 188 CLHDFSRRKDS-QFVALNCGGLAE-SLFESEIFGHEANAFTGAGKRRIGKIEHAHNGTLF 245

Query: 239 IDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPEL 291
           +D +E +   +Q  +++ L  +  ERL   ++     RVIA        L   NQ   +L
Sbjct: 246 LDEVESMPVNLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLNALGKTNQFRSDL 305

Query: 292 YYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNV 351
           YY LN   +++P LR+R +DI  LF +FL+ S  +  +  P ++    + L +H WPGNV
Sbjct: 306 YYRLNVVTLELPPLRERREDILQLFEHFLQLSSLRFDREPPVLDRQTSSNLMSHDWPGNV 365

Query: 352 RELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAA 411
           RELRNVAE +A+G+   A K+     E       E V+ +E+ ++ DAL    G ++ A+
Sbjct: 366 RELRNVAERFALGLP--AFKQSGTVSENQSLGFAEAVEAFERSLLGDALQRSGGNLSQAS 423

Query: 412 NYLQVPRKKLYLRMKKHGL 430
             L + +  L+ ++KK+GL
Sbjct: 424 QELGMAKTTLFDKVKKYGL 442