Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., nitrogen regulation protein from Sinorhizobium meliloti 1021

 Score =  169 bits (428), Expect = 2e-46
 Identities = 127/457 (27%), Positives = 226/457 (49%), Gaps = 49/457 (10%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMP--Q 77
           M + +L++DD++D+ +    ++S  G   +   D   A++ I      ++ LD++M   +
Sbjct: 1   MAADILVVDDEEDIREIVSGILSDEGHETRTAFDSESALAAINDRVPRLIFLDIWMQGSK 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           L G+ LL +IK     +PV++I+GHG+I  AV A+K GA DF+EKP    +L+ + ++ L
Sbjct: 61  LDGLALLDEIKNRHPDLPVVMISGHGNIETAVSAIKRGAYDFIEKPFKADRLILIAERAL 120

Query: 138 ELRRSFIEQKLLLSRSVKR-ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
           E  +   E   L  +S    EL+G S  + Q+R  + + A  N  ++I G SG G+  +A
Sbjct: 121 ENSKLKRENSELRRKSGDPVELIGTSVAVSQLRQMIEKVAPTNSRIMIQGPSGSGKELVA 180

Query: 197 YLIHQLTTN-NGHLPWVELVASA-----------KTEWSTVEPK----VQESAGGTLLID 240
            +IH+ +   NG  P+V L A+A            TE +T +P+    ++E+ GG L +D
Sbjct: 181 RMIHRKSARANG--PFVALNAAAITPDRMEIALFGTEGTTGQPRRTGALEEAHGGILYLD 238

Query: 241 HIELLSEEVQRNVVQSLLNQ--ERLNRPR-----TRVIAVIDQPPEQLIAQNQLLPELYY 293
            +  +  E Q  +++ L++Q  ER+   +      R+I+      E +I +     +LY+
Sbjct: 239 EVGEMPRETQNKILRVLVDQQFERVGGSKRVKVDVRIISSTAYNLENMITEGLFREDLYH 298

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            L    + VP L +R +DI  L   F++Q   + G     +    LA+L+AH WPGN+R+
Sbjct: 299 RLAVIPVRVPALAERREDIPFLVDMFMRQVSEQAGIRPRKIGEDALAVLQAHDWPGNIRQ 358

Query: 354 LRNVAELYAIGIVKLAGKERLY--------------------NQEEMLSPLDELVDDYEK 393
           LRN  E   I + +  G +                       +Q  M  PL E  + +E+
Sbjct: 359 LRNNIERLMI-LARSDGPDTPITADMLPNEVGDTLPKISAQGDQHIMTLPLREAREMFER 417

Query: 394 QVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
             +   +  F G ++  A ++ + R  L+ ++K  G+
Sbjct: 418 DYLIAQINRFGGNISRTAEFVGMERSALHRKLKSLGV 454