Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  394 bits (1012), Expect = e-114
 Identities = 202/419 (48%), Positives = 280/419 (66%), Gaps = 3/419 (0%)

Query: 19  KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQL 78
           K K  +LLIDDD+DVLD+   L +++G   +A   P +A+  +  DW+GVV+ D+YMP +
Sbjct: 6   KPKPNLLLIDDDEDVLDACRQLFNLSGYQVRATNSPQKALEALSRDWDGVVISDIYMPAM 65

Query: 79  HGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE 138
           HG++LL  +  +D +IPVI+ITGH DIP+AV+AVK GA DF+EKP++PP  L L+K+   
Sbjct: 66  HGLDLLAAVHHIDPQIPVIMITGHADIPLAVKAVKQGAADFIEKPLDPPTFLALVKKAAT 125

Query: 139 LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
            R   I Q+  +  S+  +L+G SAQ+  +R  + Q AL +R V++ G  G GR+T+A L
Sbjct: 126 QRHQLIGQRQNIQDSLAGQLLGSSAQINDLREQLGQLALTDRDVMLEGPRGVGRNTLAAL 185

Query: 199 IHQLTTN-NGHLPWVELVASAKTEWSTVEPKVQESAGGTLLIDHIELLSEEVQRNVVQSL 257
           +H+L     G L  +E       E   ++  V  S GGTL++  +E L  + QR +   L
Sbjct: 186 LHKLGPRAEGPLQQLECALVESPE--KLQQAVDASRGGTLILRELEHLPTDSQRWLASFL 243

Query: 258 LNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFH 317
           L+QER      R IA+++  PE L+ +  L PE +Y  +Q ++ +P L +RP DI  LF 
Sbjct: 244 LDQERRGNKEVRTIAILESQPETLVQEQTLTPECFYYFSQVRLRLPALCERPSDIVPLFM 303

Query: 318 YFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVAELYAIGIVKLAGKERLYNQ 377
            FLK+SC +L + MP VE  YL  L+ H WPGNVRELRNVAELYA+GIVKLA  +R+   
Sbjct: 304 AFLKESCRRLSRKMPTVENRYLDNLKQHSWPGNVRELRNVAELYAVGIVKLANVQRIAAA 363

Query: 378 EEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKDAFK 436
             +  PLDELVDDYEK++IEDALFLFSGRV++AA+YL VPRKKLYLRMKK+GL+K+ FK
Sbjct: 364 PSVKGPLDELVDDYEKRLIEDALFLFSGRVSEAADYLNVPRKKLYLRMKKYGLDKECFK 422