Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  163 bits (412), Expect = 1e-44
 Identities = 125/458 (27%), Positives = 217/458 (47%), Gaps = 47/458 (10%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMP--Q 77
           M   +L++DD++D+      ++   G   +  +D       I      VV+LD++M   +
Sbjct: 1   MAHDILIVDDEEDIRMMLAGILEDEGYDTRVAVDADSCFKAIDERTPAVVILDIWMQGSR 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           L G+++L+++      +PV++I+GHG I  AV A+K GA DF+EKP    +LL +I++ +
Sbjct: 61  LDGLQVLEELARDHPYLPVVMISGHGTIETAVSAIKQGAFDFIEKPFKADRLLLIIQRAI 120

Query: 138 ELRRSFIEQ-KLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
           E  +  +E  +L +    + +++G SA +  +   +A+ A     V+I G  G G+  +A
Sbjct: 121 ETAQLKLENAELRMRAGPETQMIGDSALIGHVAQTIAKVAPTGSRVLISGPPGTGKEVVA 180

Query: 197 YLIHQLTTN-NGHLPWVELVA----SAKTEWSTVEP-------------KVQESAGGTLL 238
            +IH  +      L  V   A      + E    EP               +++ GGTLL
Sbjct: 181 RMIHAHSPRAQNRLVVVNCAAMHPDRMEIELLGAEPGSGDGADSYRKIGLFEQADGGTLL 240

Query: 239 IDHIELLSEEVQRNVVQSLLNQE-------RLNRPRTRVIAVIDQPPEQLIAQNQLLPEL 291
           +D +  +  E Q  +V+ L +Q        R  R   RVIA  ++   Q IA  +   +L
Sbjct: 241 LDEVADMPLETQGKIVRILQDQSFERVGGGRRIRVDVRVIASTNRDLAQEIALGRFREDL 300

Query: 292 YYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNV 351
           YY LN   I +P LR+R +DI  L  +F+ ++    G P        LA L+++ WPGNV
Sbjct: 301 YYRLNVVPIRLPALRERREDITPLALHFMDRAASSAGLPPRPFGEDALAALQSYDWPGNV 360

Query: 352 RELRNVAE---LYAIGIVKLAGKERLY----------------NQEEMLSPLDELVDDYE 392
           R+LRNV +   + A G  + A +  +                 + E M  PL E  + +E
Sbjct: 361 RQLRNVVDWLLIMAPGEAREAIRADMLPAEIGSVTPDSLRLDRSGEIMTLPLREAREMFE 420

Query: 393 KQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           +  +   +  F G V+  A ++ + R  L+ ++K  G+
Sbjct: 421 RDYLIAQVTRFGGNVSKTAEFVGMERSALHRKLKSLGV 458