Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  211 bits (538), Expect = 3e-59
 Identities = 141/441 (31%), Positives = 227/441 (51%), Gaps = 31/441 (7%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           V  IDDD  +  + +  +++AGLT      P +A++ I   + GVV+ D+ MP++ G+EL
Sbjct: 4   VAFIDDDDTMRAANVQALTLAGLTVAPFALPHEALAAIDGAFPGVVVTDVRMPRIDGLEL 63

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
            ++++A+D  +PVI+ITGHGDI MAV+A++ GA DFL KP    +LLT ++  L+ R   
Sbjct: 64  FRRLRAIDPDLPVILITGHGDIAMAVDAMREGAYDFLAKPYAADRLLTSVRHALDKRHLQ 123

Query: 144 IEQKLLL----SRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLI 199
           +E + L     + S    L+G S  ME++R  + Q A  +  V++ GE+G G+  +A  +
Sbjct: 124 LENRALRRAAEAASENLPLLGDSPSMERLRKTLRQIADADVDVLVEGETGAGKDVVANAL 183

Query: 200 HQ---------LTTNNGHLPWV----ELVASAKTEWSTVEPK----VQESAGGTLLIDHI 242
           H+         +  N G LP      EL       ++    K    ++ + GGTL +D I
Sbjct: 184 HRWSRRAARPFVAVNCGALPETVIESELFGHEAGAFTGAVKKRVGRIEHAHGGTLFLDEI 243

Query: 243 ELLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLL 295
           E +S  +Q  +++ L       L    +     RV+A        L+ Q     +LYY L
Sbjct: 244 EAMSPGLQVKLLRVLETREIAPLGTNDIRPVDIRVVAATKTDLPTLVRQGMFREDLYYRL 303

Query: 296 NQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELR 355
           +   + VP LR R  DI  LF +FL ++  + G+ +P +       L+ H WPGNVREL 
Sbjct: 304 HVVSLRVPPLRDRRADIVPLFAHFLDRAAKQFGRAVPAIGEAERRHLQTHDWPGNVRELA 363

Query: 356 NVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQ 415
           + A+  A+G      +     Q+E   PL   VD +E   I  AL    G V  A   L 
Sbjct: 364 HFAKRVALGFSDEPDQADPIGQDE---PLPRRVDAFEAAQIRKALEATQGDVQAACEALG 420

Query: 416 VPRKKLYLRMKKHGLEKDAFK 436
           +PRK LY ++++H +++ A++
Sbjct: 421 LPRKTLYDKLRRHAIDQSAYR 441