Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., sigma-54 dependent transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  177 bits (450), Expect = 5e-49
 Identities = 132/459 (28%), Positives = 226/459 (49%), Gaps = 53/459 (11%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMP--Q 77
           M + +L++DD+ D+ D    ++   G + +   D   A++ I      ++ LD+++   +
Sbjct: 1   MANDILIVDDEADIRDLVAGILEDEGFSTRTARDSDSALAEIANRRPNLIFLDIWLQGSK 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           L G++LL+QIK     +PV++I+GHG+I  AV A+K GA DF+EKP    +L+ +  + L
Sbjct: 61  LDGLQLLEQIKKDHTDVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120

Query: 138 E---LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           E   L+R   E K L   +    LVG+SA + Q+R  + + A  N  ++IVG SG G+  
Sbjct: 121 ETSRLKREVRELKQLAPSA--STLVGRSACINQLRQTIERAAKANSRILIVGPSGAGKEL 178

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKT---------------EWSTVEPKVQESAGGTLLI 239
            A  +H  +++    P+V + A+A T               E S     ++E+ GGTL I
Sbjct: 179 AARTLHN-SSSRADGPFVVINAAAITPEKMEIELFGVEANGEHSRKAGALEEAHGGTLFI 237

Query: 240 DHIELLSEEVQRNVVQSLLNQERLNRPRT-------RVIAVIDQPPEQLIAQNQLLPELY 292
           D I  +  E Q  +++ L+ Q       T       R+I+   +  E+ I   +   +LY
Sbjct: 238 DEIADMPRETQNKILRVLVEQTFQRCGGTTKVNVDVRIISSTARNLEEEITAGRFREDLY 297

Query: 293 YLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVR 352
           + L+   I VP L +R DDI  L  YF++Q     G P   +    +A+L++H WPGNVR
Sbjct: 298 HRLSVVPIRVPPLSERRDDIPELIEYFMEQISAATGLPRRQIGQDAMAVLQSHVWPGNVR 357

Query: 353 ELRNVAELYAIGIVKLAGKERLY--------------------NQEEMLS-PLDELVDDY 391
           +LRN  E   + I+   G + +                     N E ++  PL E  + +
Sbjct: 358 QLRNNVE--RLMILAGGGPDAVITADMLPQDVGSMVPTMPTGNNGEHIMGLPLREAREAF 415

Query: 392 EKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           E+  +   +  FSG ++  A ++ + R  L+ ++K  G+
Sbjct: 416 ERDYLIAQISRFSGNISRTAEFVGMERSALHRKLKALGV 454