Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Phaeobacter inhibens DSM 17395

 Score =  207 bits (527), Expect = 5e-58
 Identities = 137/422 (32%), Positives = 224/422 (53%), Gaps = 17/422 (4%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M + VL++DDD  V  +    + +A   A  V     A   I PD++GV+L DM MP   
Sbjct: 1   MINRVLVVDDDAAVRAALGQTLELAECDAITVGSFVAAKDLITPDFDGVILSDMRMPGRD 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G  LL+ ++ VD  +PVI++TG GDIPMAV+A+  GA DFLEKP     L+ ++++ L+ 
Sbjct: 61  GFHLLRYVREVDGDLPVILLTGEGDIPMAVQAMGEGAFDFLEKPCASVDLMAVVRRALKT 120

Query: 140 RRSFIEQKLLLSR-----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           R    E + L SR        R + G S QME++R+     A     V++ G  G G   
Sbjct: 121 RALVRENRALKSRLESGDPAARMIFGTSPQMEELRARARGVAATGAEVLVTGAPGGGISK 180

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKTEWSTVEPKVQESAGGTLLIDHIELLSEEVQRNVV 254
           +A +IH L +  G   +V+  A+  T     +   +E+AGG+L +D I  L  E Q  ++
Sbjct: 181 VAEVIH-LMSPRGQGAFVKRPAAGLTPDGFAD-LCREAAGGSLYLDEIAALPSETQYAML 238

Query: 255 QSLLNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAA 314
           ++ L QE+    R  V +V D   E   AQ + LP+L+Y L+  ++ +P L +RP+DI  
Sbjct: 239 EA-LEQEQGLEARVLVGSVADLAEE--AAQGRFLPDLFYRLDVMRVRIPALSERPEDIPV 295

Query: 315 LFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVAELYAIGIVKLAGKERL 374
           LF +++ Q+  + G   P++   +LA L A  WPGN R L + A  + +G+ + A +   
Sbjct: 296 LFSHYVAQAAEQAGIAAPDIPQEHLAALMAQDWPGNARSLMSAAMRFVLGMPEEAAQSAE 355

Query: 375 YNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKDA 434
               E L+ +       E+ ++  AL   +G  + AA  L++PRK  Y ++ ++G+  + 
Sbjct: 356 LGLAEQLAQV-------ERSLLIAALGRQNGHASAAAKALKLPRKTFYDKLARYGIRPED 408

Query: 435 FK 436
           ++
Sbjct: 409 YR 410