Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Phaeobacter inhibens DSM 17395

 Score =  223 bits (567), Expect = 1e-62
 Identities = 136/441 (30%), Positives = 239/441 (54%), Gaps = 33/441 (7%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           + ++DD+QD+  S    ++++G   +       A+  + PD+ G+V+ D+ MP + GM+ 
Sbjct: 7   IAIVDDEQDMRQSISQWLALSGYDTETFASAEDALKVLGPDYPGIVISDIKMPGMDGMQF 66

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           LK++   D  +PVI+ITGHGD+PMAVEA+++GA DFLEKP NP ++  L K+    RR  
Sbjct: 67  LKKLMGSDSALPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSELAKRATGARRLT 126

Query: 144 IEQKLLL-----SRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           ++ ++L        ++ ++L+G S  ME++R  +      + HV+I GE+G G+  +A+ 
Sbjct: 127 LDNRVLRRELSDGSTIMKKLIGSSPVMERLREDILDLGQADGHVLIDGETGTGKTLVAHA 186

Query: 199 IHQLTTNNGHLPWVELVASAKTEWSTVE--------------PKVQESAGGTLLIDHIEL 244
           +H + +  G      LV+ A  E   +               P ++E+ GGTL+++ I+ 
Sbjct: 187 LHAVGSRAGKK--FVLVSCAALEEEALSKRLFGPMLPEDSMLPAIEEARGGTLVLEDIDA 244

Query: 245 LSEEVQRNVVQSLLNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQGQIDVPL 304
           LSE +Q  ++ S++N++ +    TR++A+ +        ++ L P+L+Y L   +I VP 
Sbjct: 245 LSETLQAKLL-SVINEQGI-PGETRIVAISNLQEAGKTCEDALRPDLFYRLAALRITVPP 302

Query: 305 LRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVAELYAIG 364
           LRQR +DI  LF    +Q   + G   P V     A L    WPGNVR+L N+AE   + 
Sbjct: 303 LRQRGEDILTLFTRLSEQFSEEYGCDAPQVSAQEAAQLLQAPWPGNVRQLINIAERAVLQ 362

Query: 365 IVKLAG---KERLYNQEEML-------SPLDELVDDYEKQVIEDALFLFSGRVADAANYL 414
             + +G      + + E+M         PL E V+ +E+ +I++ +    G +A   + L
Sbjct: 363 SRRGSGTIASLLMSDHEDMQPVMTTEGKPLKEYVEAFERMLIDNTMRRHKGSIASVMDEL 422

Query: 415 QVPRKKLYLRMKKHGLEKDAF 435
            +PR+ L  +M K+GL++  +
Sbjct: 423 CLPRRTLNEKMAKYGLQRSDY 443