Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (372), Expect = 5e-40
 Identities = 128/458 (27%), Positives = 212/458 (46%), Gaps = 61/458 (13%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
           K  +L+++D+ D     + +++      ++     QA+  I+     +V  D  + QL G
Sbjct: 5   KLHILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLGQLTG 64

Query: 81  MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQ---HL 137
           M+LL  ++     +  I+ T +G I  AV+A++ GA D+L KP     LL  I++    +
Sbjct: 65  MDLLNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSI 124

Query: 138 ELRRSFIEQKLLLSRSVKRELVG---KSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
            L+R    ++L    S ++ELVG   +SA M+++   V + +  +  V+I GESG G+  
Sbjct: 125 ALKRQ--NRRLSSELSQQQELVGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKEL 182

Query: 195 IAYLIHQLTTNNGHLPWV--------------ELVASAKTEWSTVEP----KVQESAGGT 236
            A  ++QL+  + H P+V              EL  + K  ++        K++ + GGT
Sbjct: 183 AARALYQLSARS-HKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGT 241

Query: 237 LLIDHIELLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPPEQLIAQNQLLP 289
           + +D I  L    Q  +++ L       L Q    +   RVIA   +  +Q +A+ +   
Sbjct: 242 VFLDEIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFRE 301

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +LYY LN   I +P LR+RP+DI  L  +FLK    + G  +P +    L  L  H WPG
Sbjct: 302 DLYYRLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPG 361

Query: 350 NVRELRNVAELYAIGIVKLAGKERLYNQEEML-------SPLDEL----------VDDYE 392
           NVREL N  E + +          L ++EEM+        PLD             + +E
Sbjct: 362 NVRELANRIERFVL----------LGDEEEMVQELGAAPQPLDTKRFVLPEAGIEWESFE 411

Query: 393 KQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           K  +  AL  F G    AA  L +  K    R++K+ L
Sbjct: 412 KDCLRQALDRFEGNRTKAAKCLGLSYKAFLYRLEKYQL 449