Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  202 bits (513), Expect = 2e-56
 Identities = 139/448 (31%), Positives = 231/448 (51%), Gaps = 41/448 (9%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L++DD+  +  + + L  +    A A+ D  Q    +  +W G+V+ D+ MP + G+ L
Sbjct: 11  ILIVDDEPLIGSALVQLFELESYRALALTDAKQIGLGLPDNWPGIVISDVNMPDIDGLSL 70

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           ++ + A D  IP+I++TGHGDI MAV+A+K GA DF+EKP N   +L + K+ LE R   
Sbjct: 71  MRTLLAQDKDIPIILLTGHGDIAMAVQALKQGAYDFIEKPFNNEHMLDIAKRALEKRALT 130

Query: 144 IEQKLLLSRSVKREL----------VGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRH 193
           +E     +RS+KREL          +G S  ++Q+R  + Q   +   V+I GE+G G+ 
Sbjct: 131 LE-----NRSLKRELESQSTPGPRILGHSPGIKQMRHIIHQVIDMPADVLIEGETGTGKE 185

Query: 194 TIAYLIHQ---------LTTNNGHLPWV----ELVASAKTEWSTVEP----KVQESAGGT 236
            +A  +H          +  N G +P      EL  +    ++  +     K + + GGT
Sbjct: 186 LVARYLHDHSPRAEANFVAINCGAIPETIIESELFGAESGAFTGADKTRIGKFEYANGGT 245

Query: 237 LLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLP 289
           L +D IE     +Q  +++ L ++  ERL   ++     R+IA      + L    +   
Sbjct: 246 LFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIDLDIRIIAATKVDLKSLCDTGEFRQ 305

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +L Y LN   + +P LR+R +DI  LF +F + +  +  K +  +   Y A L +H WPG
Sbjct: 306 DLLYRLNLVTVPIPALRERREDIGLLFLHFARVASARYHKALIPLTAEYTAQLVSHDWPG 365

Query: 350 NVRELRNVAELYAIGIVKLAGKERLYNQEEMLS--PLDELVDDYEKQVIEDALFLFSGRV 407
           NVRELRN+AE Y +   + A    L    ++ +   L + V+ +E+ +IE+AL    G +
Sbjct: 366 NVRELRNLAERYVLLGPEAAFATSLGQSSQLNANMSLQQRVEFFERLLIEEALSNNKGSI 425

Query: 408 ADAANYLQVPRKKLYLRMKKHGLEKDAF 435
                 L++PRK LY +M+K GL +  F
Sbjct: 426 KLTMEQLELPRKTLYDKMQKFGLNRKTF 453