Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  155 bits (393), Expect = 2e-42
 Identities = 128/457 (28%), Positives = 214/457 (46%), Gaps = 52/457 (11%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQ---PDWNGVVLLDMYMPQLH 79
           T+L++DD+ D  +     +  AG     V+  T   + +         V+L D+ MP + 
Sbjct: 7   TILVVDDEADFANGLARQLR-AGFPDAEVLVATSGKAGLDLLGRSDPAVLLTDLRMPDMD 65

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+EL+   +  D    VI++T HG I  AV A+K GA DFL KP+    L   + + LE 
Sbjct: 66  GLELMAHAQTQDATPSVILLTAHGTIETAVTALKNGAYDFLTKPVRREDLYRAVSKGLER 125

Query: 140 RRSFIEQKLL---LSRS-VKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTI 195
            R   E + L   +SR+ ++R L+G++  M +++  +A  A  +  V++ GESG G+  +
Sbjct: 126 CRLLRENRQLREEMSRTGMERTLIGETPAMRRLKETIAAVAASDYTVLVRGESGTGKELV 185

Query: 196 AYLIHQLTTN------NGHLPWV-------ELVASAKTEWSTVEPK----VQESAGGTLL 238
           A  IH L+        + H P +       EL    K  ++  E         +AGGT++
Sbjct: 186 AASIHALSGRAQRPIVSVHCPAIPDQLLESELFGHVKGAFTGAERSRKGLFMSAAGGTIV 245

Query: 239 IDHIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLP 289
           +D I  +S  +Q  +++ L  QE   RP           R+IA  +Q  E  I   +   
Sbjct: 246 LDEIGDISPGIQTKLLRVL--QEHEIRPVGSSGTVKVDVRIIASTNQALEARIKSGEFRE 303

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +L+Y LN   I  P LR R DDI  L  +FL Q+C ++      + P  +A L   +WPG
Sbjct: 304 DLFYRLNVLTIHTPPLRDRADDIPLLADHFLVQTCREMQIAAKRLSPEAMACLCGREWPG 363

Query: 350 NVRELRNVAELYAI----GIVKLAGKERLYNQEEMLSPLDE------------LVDDYEK 393
           NVREL+N     A+      V++A    +    +  +P+ E            +VD++ +
Sbjct: 364 NVRELQNFVRRLAVFCPGPTVEMAHLRLVDGPADCAAPVTEPTLTPYKDAKAHVVDEFTR 423

Query: 394 QVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           + +E  L    G +++AA    + R  L   +++ G+
Sbjct: 424 RYVERLLERTEGNISEAARISGLERVSLQKILRRLGI 460