Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  155 bits (393), Expect = 2e-42
 Identities = 120/478 (25%), Positives = 221/478 (46%), Gaps = 73/478 (15%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L++DD+  +  S+  L++  G   +A     Q +  ++ +   +V++D+ MP + G+  
Sbjct: 4   ILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLTA 63

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L+ I+ +D ++PV+++T +     A+EA K+GA D++ KP   P +L LI+Q +E  R  
Sbjct: 64  LRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRRM 123

Query: 144 IEQKLLLS--------RSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTI 195
             +  +++         ++   LVG S  M Q+   + + A  +  V++ GESG G+  +
Sbjct: 124 RARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELV 183

Query: 196 AYLIHQLTTNNGHLPWV--------------ELVASAKTEWSTVE----PKVQESAGGTL 237
           A  ++Q +   G  P++              EL    K  ++        K++++ GGT+
Sbjct: 184 ARAVYQHSL-RGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTV 242

Query: 238 LIDHIELLSEEVQRNVVQSLLNQERLNR--------PRTRVIAVIDQPPEQLIAQNQLLP 289
            +D I  +   +Q  +++ LL ++++ R           R+IA  +   E  +A  +   
Sbjct: 243 FLDEIGDMPLGIQAKLLR-LLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFRE 301

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +LYY L    + +P LR+R +DI  L  YFL +   ++  P P + P  LA L A  WPG
Sbjct: 302 DLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPG 361

Query: 350 NVRELRNVAELYAI--------------------GI----------VKLAGKE------- 372
           NVREL N      +                    G+          + LA  +       
Sbjct: 362 NVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIR 421

Query: 373 RLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           R  ++ +  +  D L+D   + V+ +AL L  G    AA  L + R  L  +++K+GL
Sbjct: 422 RTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479