Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  141 bits (356), Expect = 4e-38
 Identities = 127/453 (28%), Positives = 211/453 (46%), Gaps = 54/453 (11%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
           K +VLL++D+  +L    H +S AG       D  +A   ++     +V+ D+ +P ++G
Sbjct: 3   KHSVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNG 62

Query: 81  MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQH---L 137
           MELL+ I  +     VI+IT   ++ +AV+A+K GA DFL KP     LL  ++++   L
Sbjct: 63  MELLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFL 122

Query: 138 ELRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
           +L+R   E   L       E +G+S  M ++   +   A     V+++G SG G+  +A 
Sbjct: 123 DLKR---ENARLRGERDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKELVAG 179

Query: 198 LIHQLTTNNG-------------HLPWVELVASAKTEWSTVEP----KVQESAGGTLLID 240
            +H+L+                 HL   EL    K  ++  +     K + + GGTL  D
Sbjct: 180 ALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGTLFFD 239

Query: 241 HIELLSEEVQRNVVQSLLNQERL----NRPR---TRVIAVIDQPPEQLIAQNQLLPELYY 293
               +   VQ  +++ L +QE      N PR    R +    +  E+ I       +LYY
Sbjct: 240 EAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFREDLYY 299

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            +N   + +P LR+R  D+A L   FL++ C +  + +   E    ALL A+ +PGNVRE
Sbjct: 300 RINVVPVTLPPLRERGGDVALLAERFLRRFCAQHDRQVTFSEQARNALL-AYDYPGNVRE 358

Query: 354 LRNVAELYAIGIVKLAGKERLY-------------------NQEEMLSPLDELVDDYEKQ 394
           LRN  E   I    L  +++++                    +E     L + V  +EK+
Sbjct: 359 LRNAIERAVI----LCAEDKIHVGHLPKRIRDATQASQEQQPEETRFVQLADGVAQFEKK 414

Query: 395 VIEDALFLFSGRVADAANYLQVPRKKLYLRMKK 427
            I +AL    GR   AA  L + RK+L+L++K+
Sbjct: 415 RILEALQKTGGRRIRAAELLGITRKQLWLKLKE 447